Factsheet for PGSC0003DMT400054574

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054571	Potato	cytosol	66.86	84.48
PGSC0003DMT400054385	Potato	plastid	75.44	78.18
PGSC0003DMT400054560	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.58	77.14
PGSC0003DMT400054387	Potato	plasma membrane, vacuole	75.83	73.4
PGSC0003DMT400054564	Potato	cytosol, plastid	70.37	73.08
PGSC0003DMT400054386	Potato	vacuole	75.63	72.93
PGSC0003DMT400080465	Potato	cytosol	45.61	57.64
PGSC0003DMT400054391	Potato	cytosol, nucleus, peroxisome	45.22	53.83
PGSC0003DMT400080468	Potato	vacuole	52.44	50.95
KRH42266	Soybean	vacuole	53.41	50.83
KRH58389	Soybean	nucleus	52.83	50.56
PGSC0003DMT400080467	Potato	vacuole	53.02	50.56
KRH58344	Soybean	vacuole	51.85	50.19
KRH58388	Soybean	vacuole	53.02	49.73
TraesCS1D01G443200.1	Wheat	cytosol	29.63	48.1
PGSC0003DMT400054393	Potato	plasma membrane, vacuole	48.54	46.63
PGSC0003DMT400043091	Potato	extracellular	47.95	46.5
KRH58387	Soybean	plastid, vacuole	49.51	46.27
GSMUA_Achr3P23450_001	Banana	plasma membrane, vacuole	40.16	45.98
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	19.1	44.75
PGSC0003DMT400086243	Potato	vacuole	45.81	44.68
PGSC0003DMT400062414	Potato	plasma membrane, vacuole	48.15	44.58
PGSC0003DMT400009569	Potato	cytosol	41.33	44.54
PGSC0003DMT400046308	Potato	extracellular	46.59	43.93
TraesCS7A01G354100.1	Wheat	vacuole	36.65	43.22
GSMUA_Achr3P23470_001	Banana	extracellular, plasma membrane, vacuole	34.7	42.89
TraesCS2B01G172300.1	Wheat	vacuole	44.05	42.72
PGSC0003DMT400012979	Potato	cytosol	32.94	42.46
TraesCS2A01G051500.1	Wheat	peroxisome	28.07	42.23
TraesCS7B01G026000.1	Wheat	cytosol	27.29	42.17
TraesCS1D01G338700.1	Wheat	plasma membrane	44.05	42.16
Zm00001d046322_P001	Maize	extracellular	43.27	41.81
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.66	41.71
KXG20146	Sorghum	extracellular	43.27	41.65
TraesCS1B01G469800.1	Wheat	vacuole	43.66	41.64
TraesCS2D01G151500.1	Wheat	vacuole	42.88	41.59
PGSC0003DMT400057680	Potato	extracellular, plasma membrane, vacuole	43.47	41.53
PGSC0003DMT400089776	Potato	golgi, vacuole	44.25	41.5
HORVU7Hr1G089270.1	Barley	vacuole	42.88	41.35
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	42.69	41.17
HORVU2Hr1G008270.1	Barley	peroxisome	24.95	41.16
PGSC0003DMT400057528	Potato	extracellular	43.08	41.08
HORVU1Hr1G092680.1	Barley	golgi, vacuole	42.88	41.04
TraesCS1D01G433600.1	Wheat	vacuole	42.88	40.74
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	41.91	40.64
PGSC0003DMT400036039	Potato	extracellular, plasma membrane, vacuole	43.66	40.43
TraesCS1A01G424100.1	Wheat	vacuole	40.16	40.39
TraesCS1B01G456900.1	Wheat	vacuole	39.18	40.36
Zm00001d046319_P001	Maize	vacuole	41.33	40.3
Os06t0548100-00	Rice	golgi	41.91	40.19
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	40.55	40.15
HORVU7Hr1G089280.1	Barley	mitochondrion, peroxisome, plasma membrane	41.72	39.78
EER89907	Sorghum	plasma membrane, vacuole	40.74	39.73
TraesCS5D01G268800.1	Wheat	vacuole	40.55	39.62
TraesCS7A01G126600.1	Wheat	vacuole	40.16	39.62
TraesCS2B01G017300.1	Wheat	plastid	31.58	39.61
EER89910	Sorghum	vacuole	40.74	39.51
TraesCS7B01G273600.1	Wheat	vacuole	39.77	39.46
TraesCS5A01G261400.1	Wheat	vacuole	40.35	39.43
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	39.96	39.42
Os06t0549633-00	Rice	vacuole	40.55	39.39
KXG20147	Sorghum	vacuole	41.13	39.37
Os06t0548800-01	Rice	extracellular	40.74	39.36
TraesCS7A01G353900.1	Wheat	vacuole	39.77	39.31
TraesCS7A01G354000.1	Wheat	vacuole	39.57	39.27
TraesCS7B01G273700.1	Wheat	vacuole	39.77	39.23
TraesCS7D01G368800.1	Wheat	vacuole	39.77	39.23
Zm00001d046318_P001	Maize	vacuole	40.55	39.17
Os06t0549600-01	Rice	extracellular	40.16	39.16
TraesCS7D01G368700.1	Wheat	unclear	39.38	39.07
TraesCS7B01G273900.1	Wheat	vacuole	39.57	39.04
Os06t0549900-01	Rice	extracellular	40.16	39.02
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	42.88	38.94
Zm00001d037005_P001	Maize	vacuole	39.77	38.93
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	18.13	38.91
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	39.57	38.89
KXG26140	Sorghum	plasma membrane	40.55	38.88
HORVU7Hr1G089160.3	Barley	vacuole	39.77	38.86
KXG20949	Sorghum	vacuole	40.94	38.82
TraesCS5D01G309100.1	Wheat	vacuole	39.38	38.77
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	39.38	38.7
TraesCS7D01G472000.1	Wheat	vacuole	39.38	38.7
TraesCS7A01G353800.1	Wheat	vacuole	39.18	38.65
Os06t0548200-01	Rice	extracellular	40.16	38.58
GSMUA_Achr3P23440_001	Banana	extracellular, plasma membrane	38.6	38.52
TraesCS2B01G066900.1	Wheat	nucleus, unclear	39.57	38.52
HORVU2Hr1G008330.1	Barley	extracellular, plasma membrane, vacuole	39.77	38.49
EES13185	Sorghum	vacuole	40.94	38.46
TraesCS4B01G358600.1	Wheat	golgi	39.18	38.43
EER89909	Sorghum	extracellular, plasma membrane, vacuole	39.38	38.4
TraesCS7B01G273800.1	Wheat	plasma membrane	38.99	38.39
PGSC0003DMT400057523	Potato	extracellular, golgi, vacuole	42.11	38.37
HORVU2Hr1G122590.1	Barley	vacuole	39.96	38.32
TraesCS7B01G273500.1	Wheat	plastid	40.55	38.31
Os06t0549300-00	Rice	extracellular	38.99	38.24
TraesCS2B01G572400.1	Wheat	unclear	39.38	38.11
HORVU4Hr1G086520.1	Barley	plasma membrane, vacuole	38.4	38.1
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	38.6	38.08
TraesCS2A01G052600.1	Wheat	vacuole	39.38	37.97
TraesCS2D01G052300.1	Wheat	plastid	38.99	37.95
TraesCS3B01G070000.1	Wheat	mitochondrion	20.86	37.94
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	38.6	37.86
HORVU2Hr1G008300.1	Barley	plastid	38.79	37.83
TraesCS4B01G391900.1	Wheat	vacuole	37.62	37.7
TraesCS5B01G302700.1	Wheat	vacuole	38.21	37.69
TraesCS2A01G052900.1	Wheat	unclear	38.79	37.69
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	38.79	37.69
TraesCS2D01G052700.1	Wheat	unclear	38.79	37.69
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	37.82	37.6
TraesCS2D01G006000.1	Wheat	plastid	37.04	37.55
HORVU7Hr1G089190.1	Barley	vacuole	38.4	37.52
TraesCS2A01G052800.1	Wheat	plastid, vacuole	38.4	37.52
TraesCS2B01G066400.1	Wheat	plastid	38.6	37.5
TraesCSU01G034600.1	Wheat	vacuole	37.62	37.48
HORVU2Hr1G000540.1	Barley	golgi, vacuole	39.57	37.38
HORVU2Hr1G008310.1	Barley	golgi, vacuole	39.57	37.38
TraesCS7D01G393900.1	Wheat	vacuole	38.01	37.28
TraesCS7A01G400100.1	Wheat	unclear	38.01	37.14
TraesCS2B01G066800.1	Wheat	vacuole	38.21	37.12
Os02t0235900-01	Rice	plasma membrane, vacuole	40.94	37.04
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	38.01	36.93
TraesCS4B01G222500.1	Wheat	plasma membrane	40.74	36.93
TraesCS2A01G542600.1	Wheat	vacuole	38.21	36.91
TraesCS2B01G016900.1	Wheat	vacuole	37.23	36.87
TraesCS4A01G081300.1	Wheat	unclear	40.55	36.81
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	37.82	36.81
TraesCS4D01G223000.1	Wheat	plasma membrane	40.55	36.75
EER89908	Sorghum	plasma membrane, vacuole	38.6	36.73
HORVU4Hr1G017270.1	Barley	vacuole	38.79	36.65
HORVU2Hr1G013930.1	Barley	golgi, vacuole	38.99	36.63
HORVU7Hr1G093940.1	Barley	vacuole	37.82	36.6
Zm00001d037008_P001	Maize	golgi, vacuole	36.26	36.4
HORVU3Hr1G020240.1	Barley	extracellular, plasma membrane, vacuole	37.23	36.04
TraesCS2B01G145300.1	Wheat	plasma membrane	40.16	36.01
KXG28418	Sorghum	vacuole	37.04	35.98
HORVU4Hr1G062830.1	Barley	mitochondrion, peroxisome, plasma membrane	40.74	35.97
TraesCS3A01G111600.1	Wheat	vacuole	37.23	35.97
TraesCS4B01G104000.1	Wheat	vacuole	37.82	35.66
TraesCS4A01G212100.1	Wheat	vacuole	37.62	35.61
TraesCS4D01G101000.1	Wheat	golgi	37.62	35.54
TraesCS2D01G543700.1	Wheat	unclear	38.79	35.47
Zm00001d016199_P001	Maize	mitochondrion	38.79	35.47
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	39.57	35.43
TraesCS2A01G005700.1	Wheat	vacuole	34.11	35.35
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	39.57	35.3
HORVU2Hr1G021650.2	Barley	golgi, mitochondrion, plastid, vacuole	39.77	35.23
Zm00001d049169_P001	Maize	vacuole	36.26	35.23
KXG29886	Sorghum	mitochondrion	39.18	34.6
Os11t0495950-00	Rice	plasma membrane, vacuole	36.26	34.44
HORVU2Hr1G000530.1	Barley	plasma membrane, vacuole	29.24	34.25
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	38.6	34.08
Zm00001d037009_P001	Maize	plasma membrane	38.79	33.96
TraesCS2B01G145500.1	Wheat	vacuole	38.4	33.85
TraesCS2D01G052400.1	Wheat	vacuole	26.51	33.83
TraesCS2D01G126400.1	Wheat	golgi, vacuole	38.01	33.68
KXG29885	Sorghum	plastid	32.55	33.33
HORVU7Hr1G089210.1	Barley	mitochondrion	38.99	32.57
HORVU7Hr1G026630.1	Barley	plastid	30.99	31.36
HORVU7Hr1G089260.1	Barley	mitochondrion	27.29	28.81

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:M1BWK3	InterPro:Oxid_FAD_bind_N	PFAM:PF01565
PFAM:PF08031	EnsemblPlantsGene:PGSC0003DMG400021179	PGSC:PGSC0003DMG400021179	EnsemblPlants:PGSC0003DMT400054574	PFscan:PS51387	PANTHER:PTHR32448
PANTHER:PTHR32448:SF30	SUPFAM:SSF56176	TMHMM:TMhelix	UniParc:UPI000294F74D	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021179]

Coordinates

chr2:+:29260882..29265157

Molecular Weight (calculated)

58355.2 Da

IEP (calculated)

9.905

GRAVY (calculated)

-0.271

Length

513 amino acids

Sequence
(BLAST)

001: MGSGVTYRHT NLYWIGVTFR HTNWDRMSRT DIHLALDRML RSGTLTGIGC HVSTYILDRM PRSGTLTVWA AVHCSKIHDL QIRIRSGGHD YEGLSYISKT
101: PFVVIDLRNL RSISIDTEKK TAWIQAGATI GEVYYRIAEK SKKLAFVAGV CPTVGVGGHF TGGGYGMMSR KFGTAADNII DAKLIDANGR ILDRKSMGED
201: LFWAIRGGGG TSFGLVISWK VKLLDIPEKV TMFKVPRTLK QNVTQLVYKW QHIADKVDDN LLLRLFLRSS KSPFKGGQRI VHALFKTMFV GGVNELLHEM
301: QNRFPELGLV KEDCIEMSWI ESILFFANFP RGTSLDVLLN WNTTNQGYYF KGKSDYVQQP ISINGLEGIW KLFNQVDENS AELQFSPYGG KLSNISESET
401: PFPHRAGNIF MIHYSVTWGE IKNSQKNIAW IQKLYEYMGK YVSKSPRAAY FNYRDLDLGV NNINGNTSYE QARIWGVKYF KNNFDRLVKI KTKFDPTNFF
501: RNEQSIPPLS SEV

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.