Factsheet for PGSC0003DMT400054385

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054571	Potato	cytosol	71.72	87.44
PGSC0003DMT400054564	Potato	cytosol, plastid	82.63	82.79
Solyc02g070180.1.1	Tomato	plasma membrane, vacuole	87.88	80.56
PGSC0003DMT400054386	Potato	vacuole	85.25	79.32
PGSC0003DMT400054560	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.58	78.51
PGSC0003DMT400054387	Potato	plasma membrane, vacuole	83.64	78.11
PGSC0003DMT400054574	Potato	mitochondrion, peroxisome	78.18	75.44
PGSC0003DMT400080465	Potato	cytosol	47.68	58.13
PGSC0003DMT400054391	Potato	cytosol, nucleus, peroxisome	46.87	53.83
PGSC0003DMT400080468	Potato	vacuole	57.37	53.79
PGSC0003DMT400080467	Potato	vacuole	58.18	53.53
KRH42266	Soybean	vacuole	57.17	52.5
KRH58388	Soybean	vacuole	57.58	52.1
KRH58344	Soybean	vacuole	55.76	52.08
KRH58389	Soybean	nucleus	56.36	52.05
KRH58387	Soybean	plastid, vacuole	54.55	49.18
TraesCS1D01G443200.1	Wheat	cytosol	30.71	48.1
PGSC0003DMT400043091	Potato	extracellular	51.31	48.02
PGSC0003DMT400054393	Potato	plasma membrane, vacuole	51.72	47.94
GSMUA_Achr3P23450_001	Banana	plasma membrane, vacuole	43.03	47.54
PGSC0003DMT400062414	Potato	plasma membrane, vacuole	52.53	46.93
PGSC0003DMT400086243	Potato	vacuole	48.89	46.01
PGSC0003DMT400009569	Potato	cytosol	43.64	45.38
GSMUA_Achr3P23470_001	Banana	extracellular, plasma membrane, vacuole	37.98	45.3
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	20.0	45.21
TraesCS2B01G172300.1	Wheat	vacuole	47.07	44.05
TraesCS7A01G354100.1	Wheat	vacuole	38.59	43.91
PGSC0003DMT400046308	Potato	extracellular	48.08	43.75
KXG20146	Sorghum	extracellular	46.87	43.53
Zm00001d046322_P001	Maize	extracellular	46.67	43.5
PGSC0003DMT400057528	Potato	extracellular	47.27	43.49
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.07	43.39
TraesCS2D01G151500.1	Wheat	vacuole	46.26	43.29
TraesCS1D01G338700.1	Wheat	plasma membrane	46.87	43.28
PGSC0003DMT400057680	Potato	extracellular, plasma membrane, vacuole	46.87	43.2
PGSC0003DMT400089776	Potato	golgi, vacuole	47.68	43.14
TraesCS1B01G469800.1	Wheat	vacuole	46.87	43.12
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	45.66	42.72
PGSC0003DMT400036039	Potato	extracellular, plasma membrane, vacuole	47.47	42.42
HORVU1Hr1G092680.1	Barley	golgi, vacuole	45.66	42.16
TraesCS1D01G433600.1	Wheat	vacuole	45.86	42.04
PGSC0003DMT400012979	Potato	cytosol	33.74	41.96
Os06t0548100-00	Rice	golgi	45.25	41.87
TraesCS1B01G456900.1	Wheat	vacuole	41.82	41.57
HORVU7Hr1G089280.1	Barley	mitochondrion, peroxisome, plasma membrane	45.05	41.45
Zm00001d046318_P001	Maize	vacuole	44.44	41.43
TraesCS1A01G424100.1	Wheat	vacuole	42.63	41.37
TraesCS5D01G268800.1	Wheat	vacuole	43.84	41.33
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	43.23	41.31
Zm00001d046319_P001	Maize	vacuole	43.84	41.25
EER89910	Sorghum	vacuole	44.04	41.21
TraesCS7B01G273900.1	Wheat	vacuole	43.23	41.15
TraesCS5A01G261400.1	Wheat	vacuole	43.64	41.14
Os06t0549633-00	Rice	vacuole	43.84	41.1
EER89907	Sorghum	plasma membrane, vacuole	43.64	41.06
TraesCS2A01G051500.1	Wheat	peroxisome	28.28	41.06
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	43.23	41.0
TraesCS7B01G026000.1	Wheat	cytosol	27.47	40.96
Os06t0548800-01	Rice	extracellular	43.64	40.68
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	42.83	40.61
HORVU7Hr1G089270.1	Barley	vacuole	43.64	40.6
Os06t0549900-01	Rice	extracellular	43.23	40.53
EER89909	Sorghum	extracellular, plasma membrane, vacuole	43.03	40.49
Zm00001d037005_P001	Maize	vacuole	42.83	40.46
TraesCS7D01G472000.1	Wheat	vacuole	42.63	40.42
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	43.43	40.41
TraesCS7A01G353800.1	Wheat	vacuole	42.42	40.38
TraesCS7A01G354000.1	Wheat	vacuole	42.02	40.23
HORVU2Hr1G008270.1	Barley	peroxisome	25.25	40.19
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	19.39	40.17
PGSC0003DMT400057523	Potato	extracellular, golgi, vacuole	45.66	40.14
TraesCS7B01G273800.1	Wheat	plasma membrane	42.22	40.12
KXG20147	Sorghum	vacuole	43.43	40.11
TraesCS2B01G017300.1	Wheat	plastid	33.13	40.1
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	42.02	40.0
TraesCS7A01G126600.1	Wheat	vacuole	41.82	39.81
KXG20949	Sorghum	vacuole	43.43	39.74
TraesCS7B01G273600.1	Wheat	vacuole	41.41	39.65
TraesCS7D01G368700.1	Wheat	unclear	41.41	39.65
HORVU7Hr1G089160.3	Barley	vacuole	42.02	39.62
HORVU7Hr1G089190.1	Barley	vacuole	42.02	39.62
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	41.62	39.62
Os06t0549600-01	Rice	extracellular	41.82	39.35
TraesCS7B01G273700.1	Wheat	vacuole	41.21	39.23
Os06t0549300-00	Rice	extracellular	41.41	39.2
Os06t0548200-01	Rice	extracellular	42.22	39.14
TraesCS7A01G353900.1	Wheat	vacuole	41.01	39.11
GSMUA_Achr3P23440_001	Banana	extracellular, plasma membrane	40.61	39.11
TraesCS7B01G273500.1	Wheat	plastid	42.83	39.04
TraesCS7D01G368800.1	Wheat	vacuole	41.01	39.04
TraesCS7A01G400100.1	Wheat	unclear	41.21	38.86
EES13185	Sorghum	vacuole	42.83	38.83
HORVU2Hr1G008300.1	Barley	plastid	41.21	38.78
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	44.24	38.76
TraesCS2D01G052300.1	Wheat	plastid	41.21	38.71
KXG26140	Sorghum	plasma membrane	41.82	38.69
HORVU2Hr1G000540.1	Barley	golgi, vacuole	42.42	38.67
TraesCS3B01G070000.1	Wheat	mitochondrion	22.02	38.65
TraesCS5D01G309100.1	Wheat	vacuole	40.61	38.58
TraesCS2A01G052900.1	Wheat	unclear	41.01	38.45
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	40.61	38.43
TraesCS7D01G393900.1	Wheat	vacuole	40.61	38.43
TraesCS2B01G066400.1	Wheat	plastid	40.81	38.26
TraesCS2D01G006000.1	Wheat	plastid	38.99	38.14
HORVU2Hr1G008330.1	Barley	extracellular, plasma membrane, vacuole	40.81	38.11
HORVU4Hr1G086520.1	Barley	plasma membrane, vacuole	39.8	38.1
HORVU2Hr1G122590.1	Barley	vacuole	41.01	37.94
TraesCS2B01G572400.1	Wheat	unclear	40.61	37.92
TraesCS2A01G052800.1	Wheat	plastid, vacuole	40.2	37.9
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.4	37.88
TraesCS4B01G358600.1	Wheat	golgi	40.0	37.86
EER89908	Sorghum	plasma membrane, vacuole	41.21	37.85
TraesCS2A01G052600.1	Wheat	vacuole	40.61	37.78
TraesCS2B01G066900.1	Wheat	nucleus, unclear	40.2	37.76
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	39.19	37.6
HORVU4Hr1G017270.1	Barley	vacuole	41.21	37.57
HORVU3Hr1G020240.1	Barley	extracellular, plasma membrane, vacuole	40.2	37.55
KXG28418	Sorghum	vacuole	40.0	37.5
TraesCS2B01G066800.1	Wheat	vacuole	40.0	37.5
TraesCS4B01G391900.1	Wheat	vacuole	38.79	37.5
Zm00001d049169_P001	Maize	vacuole	40.0	37.5
Os02t0235900-01	Rice	plasma membrane, vacuole	42.83	37.39
HORVU7Hr1G093940.1	Barley	vacuole	40.0	37.36
TraesCS2D01G052700.1	Wheat	unclear	39.8	37.31
TraesCS5B01G302700.1	Wheat	vacuole	39.19	37.31
TraesCS2A01G542600.1	Wheat	vacuole	40.0	37.29
TraesCS4B01G222500.1	Wheat	plasma membrane	42.63	37.28
TraesCS2B01G145300.1	Wheat	plasma membrane	43.03	37.24
TraesCS4A01G081300.1	Wheat	unclear	42.42	37.17
TraesCSU01G034600.1	Wheat	vacuole	38.59	37.09
TraesCS2B01G016900.1	Wheat	vacuole	38.79	37.07
HORVU2Hr1G008310.1	Barley	golgi, vacuole	40.61	37.02
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	39.39	36.93
TraesCS4D01G223000.1	Wheat	plasma membrane	42.22	36.93
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	39.19	36.81
TraesCS3A01G111600.1	Wheat	vacuole	39.39	36.72
HORVU4Hr1G062830.1	Barley	mitochondrion, peroxisome, plasma membrane	43.03	36.66
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	42.42	36.65
HORVU2Hr1G013930.1	Barley	golgi, vacuole	40.4	36.63
Zm00001d037008_P001	Maize	golgi, vacuole	37.78	36.59
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	42.42	36.52
Zm00001d016199_P001	Maize	mitochondrion	41.21	36.36
TraesCS2D01G543700.1	Wheat	unclear	41.01	36.19
TraesCS4A01G212100.1	Wheat	vacuole	39.6	36.16
HORVU2Hr1G021650.2	Barley	golgi, mitochondrion, plastid, vacuole	42.22	36.1
TraesCS4B01G104000.1	Wheat	vacuole	39.6	36.03
TraesCS2A01G005700.1	Wheat	vacuole	35.76	35.76
TraesCS4D01G101000.1	Wheat	golgi	39.19	35.73
KXG29886	Sorghum	mitochondrion	41.21	35.11
Os11t0495950-00	Rice	plasma membrane, vacuole	37.98	34.81
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	40.4	34.42
KXG29885	Sorghum	plastid	34.75	34.33
TraesCS2D01G052400.1	Wheat	vacuole	27.88	34.33
HORVU2Hr1G000530.1	Barley	plasma membrane, vacuole	30.3	34.25
TraesCS2B01G145500.1	Wheat	vacuole	40.2	34.19
Zm00001d037009_P001	Maize	plasma membrane	40.4	34.13
TraesCS2D01G126400.1	Wheat	golgi, vacuole	39.8	34.02
HORVU7Hr1G089210.1	Barley	mitochondrion	41.82	33.71
HORVU7Hr1G026630.1	Barley	plastid	31.72	30.97
HORVU7Hr1G089260.1	Barley	mitochondrion	29.09	29.63

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:M1BW85	InterPro:Oxid_FAD_bind_N	PFAM:PF01565
PFAM:PF08031	EnsemblPlantsGene:PGSC0003DMG400021107	PGSC:PGSC0003DMG400021107	EnsemblPlants:PGSC0003DMT400054385	PFscan:PS51387	PANTHER:PTHR32448
PANTHER:PTHR32448:SF30	SUPFAM:SSF56176	UniParc:UPI000294A1B4	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021107]

Coordinates

chr2:-:29349637..29351187

Molecular Weight (calculated)

55964.4 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.295

Length

495 amino acids

Sequence
(BLAST)

001: MNSNSSQVIH TPKNSSYSTI YNSFSDHNLR ITSNFKPSII FTPINESQIQ VAIHCSKIHD LQIRIRSGGH DYEGLSYISD TPFVVIDFRN LRLISIDTEN
101: KTAWIQAGAT LGEVYYRIAE NSNKLAFVAG ACPTVGVGGH FSGGGYGMMS RKFGTAADNI IDAKLIDANG RIQDRESMGE DLFWAIRGGG GTSFGLIISW
201: KVKLLDIPEK VTVFNVPRTL EQNATQLVYK WQHIVDKVDD NLLLRIFLRN TEFPFGGGQR AIYASFTTMF VGGGDDLLHE MEDRFPELGL VKEDCIEMSW
301: IESILFFAGF PRGTSLDVLL NWNTTTNQRG YFKGKSDYVQ QPISINGLEG MWKLLNQLAV ENSGAELQFS PYGGKLSDIS ESEIPFPHRA GNIFMIDYAV
401: YWGKIEDSQR NIAWSRKLYG YMAKYVSKSP RAAYFNYRDL DLGFNNINGN TSYEQAKIWG EKYFKNNFDR LVQVKTKFDP TNFFRNEQSI PPLLS

Best Arabidopsis Sequence Match ( AT5G44440.2 )
(BLAST)

001: MGNFFLRNFV LGKKKENKLC ENSCQNLKVF LIFKILGFSF STSKLCRVEK LFPYKITQSL HSQYYPPILE MEFSSFLFTI LLFSLNISPL VSAHGSNHED
101: FLKCLSYRMN DNTVEPKVIH TSKDSSFFSI LDSSIQNPRF SVSETPKPVS IITPVKASDV QTVIRCAQLH GIHVRTRSAG HCYEGLSYIA YNKPFAVIDL
201: RNLRSISLDV DNRTGWVQTG ATAGELYYEI GKTTKSLAFP AGIHPTVGVG GQFSGGGYGT LLRKYGLAAD NIIDALVVDA SGRILDRQAM GEDYFWAIRG
301: GGGSSFGVIL SWKVKLVDVP STITVFKVQK TSKKEAVRII KKWQYAADKV PDDLFIRTTL ERSNKNAVHA LFTGLYIGPV NNLLALMEEK FPELGLEKEG
401: CEEMSWIESV LWFADFPKGE SLGVLTNRER TSLSFKGKDD FVQEPIPEAA IQEIWRRLEA PEARLGKIIL TPFGGKMSEM AEYETPFPHR GGNLYEIQYV
501: AYWREEEDKN KTETDKYLKW VDSVYEFMTP YVSKSPRGAY VNFKDMDLGM YLGKKKTKYE EGKSWGVKYF KNNFERLVRV KTRVDPTDFF CDEQSIPLVN
601: KVT

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT5G44440]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.