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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole

Predictor Summary:
  • plastid 2
  • endoplasmic reticulum 4
  • mitochondrion 1
  • vacuole 4
  • cytosol 1
  • extracellular 3
  • plasma membrane 4
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, vacuole
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:endoplasmic reticulum
iPSORT:mitochondrion
MultiLoc:vacuole
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400054385 Potato plastid 80.56 87.88
PGSC0003DMT400054571 Potato cytosol 63.52 84.48
Solyc02g070130.1.1 Tomato vacuole 81.48 82.55
Solyc02g070200.1.1 Tomato vacuole 80.0 79.85
Solyc02g070110.1.1 Tomato extracellular, vacuole 76.85 78.3
Solyc02g070170.1.1 Tomato extracellular, vacuole 75.56 76.26
Solyc06g065060.1.1 Tomato extracellular 54.44 54.65
KRH58389 Soybean nucleus 54.07 54.48
KRH42266 Soybean vacuole 53.7 53.8
KRH58388 Soybean vacuole 54.44 53.75
Solyc06g065070.1.1 Tomato vacuole 53.15 53.54
KRH58344 Soybean vacuole 52.22 53.21
GSMUA_Achr3P23450_001 Banana plasma membrane, vacuole 41.48 50.0
KRH58387 Soybean plastid, vacuole 50.56 49.73
Solyc09g072660.2.1 Tomato extracellular 49.81 49.0
Solyc02g070070.1.1 Tomato extracellular 47.96 48.78
Solyc10g054480.1.1 Tomato plastid 27.41 48.68
Solyc02g070090.1.1 Tomato extracellular 47.96 48.5
Solyc02g070060.1.1 Tomato vacuole 46.48 47.72
Solyc02g022850.1.1 Tomato vacuole 47.04 46.95
TraesCS1D01G443200.1 Wheat cytosol 27.41 46.84
GSMUA_Achr3P23470_001 Banana extracellular, plasma membrane, vacuole 35.74 46.51
Solyc02g079440.1.1 Tomato nucleus 45.93 46.1
Solyc02g079450.1.1 Tomato extracellular 45.19 45.44
Solyc02g069690.1.1 Tomato golgi, vacuole 45.93 45.34
Solyc02g079460.1.1 Tomato extracellular, golgi, vacuole 44.44 45.11
TraesCS7A01G354100.1 Wheat vacuole 36.3 45.06
TraesCS2B01G172300.1 Wheat vacuole 43.52 44.42
Solyc02g079470.1.1 Tomato endoplasmic reticulum, vacuole 44.26 44.34
TraesCS7A01G353600.1 Wheat cytosol, nucleus, peroxisome 17.96 44.29
TraesCS7D01G369200.1 Wheat extracellular, vacuole 42.96 43.86
TraesCS1A01G433900.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 43.52 43.76
TraesCS2D01G151500.1 Wheat vacuole 42.78 43.67
TraesCS1D01G338700.1 Wheat plasma membrane 43.33 43.66
Zm00001d046322_P001 Maize extracellular 42.78 43.5
TraesCS1B01G469800.1 Wheat vacuole 43.33 43.49
KXG20146 Sorghum extracellular 42.59 43.15
Os06t0549633-00 Rice vacuole 42.04 42.99
HORVU7Hr1G089280.1 Barley mitochondrion, peroxisome, plasma membrane 42.59 42.75
HORVU7Hr1G089270.1 Barley vacuole 42.04 42.67
TraesCS1D01G433600.1 Wheat vacuole 42.59 42.59
TraesCS1B01G456900.1 Wheat vacuole 39.26 42.57
Os06t0548100-00 Rice golgi 42.04 42.43
TraesCS7A01G353700.1 Wheat extracellular, vacuole 41.67 42.29
TraesCS7D01G368500.1 Wheat plasma membrane, vacuole 40.56 42.28
HORVU1Hr1G092680.1 Barley golgi, vacuole 41.85 42.16
Zm00001d046319_P001 Maize vacuole 40.93 42.02
TraesCS1A01G424100.1 Wheat vacuole 39.63 41.96
TraesCS7D01G368700.1 Wheat unclear 39.81 41.59
TraesCS7A01G354000.1 Wheat vacuole 39.63 41.39
TraesCS7B01G273600.1 Wheat vacuole 39.44 41.2
Solyc02g079480.1.1 Tomato plasma membrane, vacuole 42.78 41.18
TraesCS5D01G268800.1 Wheat vacuole 40.0 41.14
Os06t0549300-00 Rice extracellular 39.81 41.11
EER89907 Sorghum plasma membrane, vacuole 40.0 41.06
GSMUA_Achr3P23440_001 Banana extracellular, plasma membrane 39.07 41.05
TraesCS5A01G261400.1 Wheat vacuole 39.81 40.95
KXG20147 Sorghum vacuole 40.56 40.86
KXG20949 Sorghum vacuole 40.93 40.85
TraesCS7D01G124500.1 Wheat plasma membrane, vacuole 39.26 40.77
HORVU7Hr1G089160.3 Barley vacuole 39.63 40.76
Os06t0549600-01 Rice extracellular 39.63 40.68
Os06t0548800-01 Rice extracellular 40.0 40.68
Zm00001d046318_P001 Maize vacuole 40.0 40.68
TraesCS7A01G353900.1 Wheat vacuole 39.07 40.66
EER89910 Sorghum vacuole 39.81 40.64
TraesCS7B01G273700.1 Wheat vacuole 39.07 40.58
TraesCS7D01G369100.1 Wheat plasma membrane, vacuole 42.41 40.53
TraesCS7B01G388200.1 Wheat extracellular, plasma membrane, vacuole 39.07 40.42
TraesCS7A01G126600.1 Wheat vacuole 38.89 40.38
TraesCS7D01G368800.1 Wheat vacuole 38.89 40.38
TraesCS7B01G026000.1 Wheat cytosol 24.81 40.36
EER89909 Sorghum extracellular, plasma membrane, vacuole 39.26 40.3
Zm00001d037005_P001 Maize vacuole 39.07 40.27
TraesCS7B01G273900.1 Wheat vacuole 38.7 40.19
TraesCS2B01G017300.1 Wheat plastid 30.37 40.1
TraesCS7A01G484600.1 Wheat extracellular, plasma membrane, vacuole 38.7 40.04
TraesCS7A01G353800.1 Wheat vacuole 38.52 40.0
TraesCS7B01G273800.1 Wheat plasma membrane 38.52 39.92
Os06t0548200-01 Rice extracellular 39.44 39.89
TraesCS2D01G052300.1 Wheat plastid 38.89 39.85
TraesCS7D01G472000.1 Wheat vacuole 38.52 39.85
Os06t0549900-01 Rice extracellular 38.89 39.77
EES13185 Sorghum vacuole 40.19 39.74
Solyc04g080400.1.1 Tomato extracellular 41.48 39.72
HORVU7Hr1G089190.1 Barley vacuole 38.52 39.62
TraesCS7D01G369000.1 Wheat extracellular, vacuole 38.15 39.62
TraesCS7B01G273500.1 Wheat plastid 39.81 39.59
HORVU3Hr1G020240.1 Barley extracellular, plasma membrane, vacuole 38.7 39.43
TraesCS2B01G066400.1 Wheat plastid 38.52 39.39
HORVU2Hr1G008300.1 Barley plastid 38.33 39.35
TraesCS2A01G051500.1 Wheat peroxisome 24.81 39.3
HORVU2Hr1G008330.1 Barley extracellular, plasma membrane, vacuole 38.52 39.25
TraesCS7A01G400100.1 Wheat unclear 38.15 39.24
HORVU4Hr1G017270.1 Barley vacuole 39.44 39.23
TraesCS7D01G393900.1 Wheat vacuole 37.96 39.2
TraesCS5D01G309100.1 Wheat vacuole 37.78 39.16
EER89908 Sorghum plasma membrane, vacuole 39.07 39.15
TraesCS2B01G066900.1 Wheat nucleus, unclear 38.15 39.09
TraesCS2A01G542600.1 Wheat vacuole 38.33 38.98
TraesCS5A01G555000.1 Wheat plasma membrane, vacuole 37.22 38.95
TraesCS2A01G052600.1 Wheat vacuole 38.33 38.91
TraesCS2B01G572400.1 Wheat unclear 38.15 38.87
TraesCS4B01G358600.1 Wheat golgi 37.59 38.81
HORVU2Hr1G122590.1 Barley vacuole 38.33 38.69
HORVU2Hr1G000540.1 Barley golgi, vacuole 38.89 38.67
TraesCS2A01G052800.1 Wheat plastid, vacuole 37.59 38.67
TraesCS2B01G066800.1 Wheat vacuole 37.78 38.64
HORVU2Hr1G008270.1 Barley peroxisome 22.22 38.59
Zm00001d037008_P001 Maize golgi, vacuole 36.48 38.55
TraesCS3D01G113700.1 Wheat extracellular, plasma membrane, vacuole 37.59 38.52
TraesCS2A01G052900.1 Wheat unclear 37.59 38.45
TraesCS2D01G052500.1 Wheat endoplasmic reticulum, extracellular, vacuole 37.59 38.45
TraesCS2D01G052700.1 Wheat unclear 37.59 38.45
TraesCS2D01G006000.1 Wheat plastid 35.93 38.34
HORVU4Hr1G086520.1 Barley plasma membrane, vacuole 36.67 38.3
TraesCS3B01G132200.1 Wheat extracellular, plasma membrane, vacuole 37.41 38.26
Zm00001d049169_P001 Maize vacuole 37.41 38.26
TraesCS4B01G222500.1 Wheat plasma membrane 40.0 38.16
KXG26140 Sorghum plasma membrane 37.78 38.13
HORVU7Hr1G093940.1 Barley vacuole 37.41 38.11
TraesCS4B01G391900.1 Wheat vacuole 36.11 38.09
KXG28418 Sorghum vacuole 37.22 38.07
TraesCS4A01G081300.1 Wheat unclear 39.81 38.05
TraesCS4B01G104000.1 Wheat vacuole 38.33 38.05
TraesCS2A01G052700.1 Wheat extracellular, plasma membrane, plastid, vacuole 36.85 38.05
TraesCS3B01G070000.1 Wheat mitochondrion 19.81 37.94
TraesCS5B01G302700.1 Wheat vacuole 36.48 37.88
TraesCS3A01G111600.1 Wheat vacuole 37.22 37.85
TraesCSU01G034600.1 Wheat vacuole 35.93 37.67
TraesCS2B01G016900.1 Wheat vacuole 36.11 37.64
TraesCS4A01G212100.1 Wheat vacuole 37.78 37.64
TraesCS4D01G223000.1 Wheat plasma membrane 39.44 37.63
Os02t0235900-01 Rice plasma membrane, vacuole 39.44 37.57
HORVU2Hr1G013930.1 Barley golgi, vacuole 37.96 37.55
TraesCS4D01G101000.1 Wheat golgi 37.59 37.38
TraesCS7D01G368900.1 Wheat cytosol, peroxisome, plasma membrane 16.48 37.24
HORVU4Hr1G062830.1 Barley mitochondrion, peroxisome, plasma membrane 40.0 37.18
Zm00001d016199_P001 Maize mitochondrion 38.52 37.08
HORVU2Hr1G008310.1 Barley golgi, vacuole 37.22 37.02
TraesCS2D01G543700.1 Wheat unclear 38.33 36.9
TraesCS2B01G145300.1 Wheat plasma membrane 39.07 36.89
Os11t0495950-00 Rice plasma membrane, vacuole 36.48 36.48
TraesCS2A01G005700.1 Wheat vacuole 33.33 36.36
TraesCS2D01G126200.1 Wheat plasma membrane, vacuole 38.7 36.35
TraesCS2A01G123200.1 Wheat plasma membrane, vacuole 38.52 36.3
HORVU2Hr1G021650.2 Barley golgi, mitochondrion, plastid, vacuole 38.89 36.27
KXG29886 Sorghum mitochondrion 38.52 35.8
HORVU2Hr1G000530.1 Barley plasma membrane, vacuole 28.7 35.39
TraesCS2D01G052400.1 Wheat vacuole 26.3 35.32
TraesCS2A01G123400.1 Wheat plasma membrane, vacuole 37.78 35.11
TraesCS2B01G145500.1 Wheat vacuole 37.59 34.88
Zm00001d037009_P001 Maize plasma membrane 37.78 34.81
TraesCS2D01G126400.1 Wheat golgi, vacuole 37.04 34.54
HORVU7Hr1G089210.1 Barley mitochondrion 39.26 34.53
KXG29885 Sorghum plastid 31.3 33.73
HORVU7Hr1G089260.1 Barley mitochondrion 28.33 31.48
HORVU7Hr1G026630.1 Barley plastid 29.44 31.36
Protein Annotations
Gene3D:3.30.43.10Gene3D:3.30.465.50Gene3D:3.40.462.20MapMan:50.1.1InterPro:BBEInterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sfInterPro:FAD-bd_2_sub1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0016614GO:GO:0050660GO:GO:0055114
GO:GO:0071949InterPro:IPR016166InterPro:IPR016167UniProt:K4B800InterPro:Oxid_FAD_bind_NPFAM:PF01565
PFAM:PF08031PFscan:PS51387PANTHER:PTHR32448PANTHER:PTHR32448:SF30SUPFAM:SSF56176SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g070180.1EnsemblPlants:Solyc02g070180.1.1UniParc:UPI0002768678SEG:seg::
Description
No Description!
Coordinates
chr2:-:39963877..39965499
Molecular Weight (calculated)
61525.6 Da
IEP (calculated)
8.726
GRAVY (calculated)
-0.216
Length
540 amino acids
Sequence
(BLAST)
001: MSKLTTFLIL SICLISYSWA YKSTHGDFVE CLSHKIMNST SISQVIHTPK NSSYSTIYNS FLDHNLRITS NFKPSIIFTP TKESQIQVAI YCSKLHDLQI
101: RIRSGGHDYE GLSYISDNPF FLIDLRNLRS ISIDIKNKTA WVQAGATLGE VYYRIAEKSN NKLAFVAGAC PSVGVGGHIS GGGYSMMSRK FGIAADNIID
201: AKLIDANGQI QDRESMGEDL FWAIRGGGGT SFGLIISWKI KLVDIPEKVT VFNVGRTLKQ NATQLVYKWQ HITDKVDDNL LIRLFVRNSE FPYGFGKRDI
301: YAFFTTMFVG RVDELLHEMQ DKFPELGLVK EDCIEMSWIE SILFFAGSPR GTSLDVLLHW NITTTNERGY FKGKSDYVQH PISIYGLEGM WKLLNQLAVE
401: NSGAELQFSP YGGKLSDISE SEIPFPHRAG NIFTIEYGVY WSRIENSQRN IAWIRKLYEY MGKYVSKSPR AAYLNYRDLD LGMNNINGNT SYEQARVWGV
501: KYFNNNFDRL VQVKTKFDPT NFFRNQQSIP PLLSLGYNIW
Best Arabidopsis Sequence Match ( AT5G44440.1 )
(BLAST)
001: MEFSSFLFTI LLFSLNISPL VSAHGSNHED FLKCLSYRMN DNTVEPKVIH TSKDSSFFSI LDSSIQNPRF SVSETPKPVS IITPVKASDV QTVIRCAQLH
101: GIHVRTRSAG HCYEGLSYIA YNKPFAVIDL RNLRSISLDV DNRTGWVQTG ATAGELYYEI GKTTKSLAFP AGIHPTVGVG GQFSGGGYGT LLRKYGLAAD
201: NIIDALVVDA SGRILDRQAM GEDYFWAIRG GGGSSFGVIL SWKVKLVDVP STITVFKVQK TSKKEAVRII KKWQYAADKV PDDLFIRTTL ERSNKNAVHA
301: LFTGLYIGPV NNLLALMEEK FPELGLEKEG CEEMSWIESV LWFADFPKGE SLGVLTNRER TSLSFKGKDD FVQEPIPEAA IQEIWRRLEA PEARLGKIIL
401: TPFGGKMSEM AEYETPFPHR GGNLYEIQYV AYWREEEDKN KTETDKYLKW VDSVYEFMTP YVSKSPRGAY VNFKDMDLGM YLGKKKTKYE EGKSWGVKYF
501: KNNFERLVRV KTRVDPTDFF CDEQSIPLVN KVT
Arabidopsis Description
FAD-binding Berberine family protein [Source:TAIR;Acc:AT5G44440]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.