Factsheet for Solyc04g080400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 2
peroxisome 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009569	Potato	cytosol	78.55	93.07
KRG92465	Soybean	golgi, vacuole	56.56	58.0
KRH34335	Soybean	vacuole	56.03	57.45
HORVU3Hr1G083890.1	Barley	cytosol, peroxisome	31.56	50.57
Os08t0158300-00	Rice	peroxisome	35.82	50.25
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	44.5	49.51
GSMUA_Achr1P24050_001	Banana	golgi	39.54	47.05
Os08t0158400-00	Rice	endoplasmic reticulum, extracellular, vacuole	46.81	46.98
Zm00001d049536_P001	Maize	vacuole	44.86	46.51
Os08t0343600-00	Rice	cytosol, peroxisome	43.97	46.27
Zm00001d024541_P001	Maize	vacuole	45.74	46.24
TraesCS3B01G406900.1	Wheat	vacuole	43.62	46.15
TraesCS1D01G426600.1	Wheat	extracellular, vacuole	45.57	45.89
TraesCS3A01G374600.1	Wheat	vacuole	43.44	45.88
HORVU1Hr1G091500.1	Barley	extracellular, vacuole	46.28	45.87
KXG24485	Sorghum	extracellular	46.81	45.83
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	45.21	45.45
TraesCS3D01G367100.1	Wheat	vacuole	42.91	45.4
TraesCS3A01G374700.1	Wheat	vacuole	42.73	45.05
TraesCS1B01G448900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	45.04	44.88
TraesCS3D01G367200.1	Wheat	vacuole	42.55	44.86
Solyc06g065060.1.1	Tomato	extracellular	42.55	44.61
Zm00001d049539_P001	Maize	extracellular, vacuole	43.26	44.53
EES14581	Sorghum	extracellular	43.97	44.36
HORVU3Hr1G083840.1	Barley	mitochondrion, plastid	42.91	44.16
KXG24484	Sorghum	plastid	42.73	44.14
Zm00001d022215_P001	Maize	plastid	40.96	43.83
Solyc06g065070.1.1	Tomato	vacuole	41.31	43.47
Solyc02g070110.1.1	Tomato	extracellular, vacuole	40.78	43.4
Solyc02g070200.1.1	Tomato	vacuole	41.13	42.88
HORVU3Hr1G083860.2	Barley	mitochondrion, plastid	24.47	41.57
OQU79940	Sorghum	endoplasmic reticulum	40.96	41.55
Solyc02g070180.1.1	Tomato	plasma membrane, vacuole	39.72	41.48
Solyc02g070130.1.1	Tomato	vacuole	39.18	41.46
Solyc02g070170.1.1	Tomato	extracellular, vacuole	39.18	41.31
Solyc10g054480.1.1	Tomato	plastid	21.45	39.8
Solyc02g070070.1.1	Tomato	extracellular	37.41	39.74
Solyc02g070060.1.1	Tomato	vacuole	36.88	39.54
Solyc09g072660.2.1	Tomato	extracellular	38.12	39.16
Solyc02g022850.1.1	Tomato	vacuole	37.23	38.82
Solyc02g079440.1.1	Tomato	nucleus	36.88	38.66
Solyc02g070090.1.1	Tomato	extracellular	35.64	37.64
Solyc02g079460.1.1	Tomato	extracellular, golgi, vacuole	35.28	37.41
Solyc02g079450.1.1	Tomato	extracellular	35.46	37.24
Solyc02g079480.1.1	Tomato	plasma membrane, vacuole	36.88	37.08
Solyc02g069690.1.1	Tomato	golgi, vacuole	35.82	36.93
Solyc02g079470.1.1	Tomato	endoplasmic reticulum, vacuole	34.75	36.36
VIT_18s0089g01200.t01	Wine grape	plasma membrane	57.8	28.23
Os08t0158200-02	Rice	extracellular	1.77	1.89

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:K4BVB9	InterPro:Oxid_FAD_bind_N	PFAM:PF01565
PFAM:PF08031	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF13	SUPFAM:SSF56176	EnsemblPlantsGene:Solyc04g080400.1
EnsemblPlants:Solyc04g080400.1.1	UniParc:UPI000276587F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:64588039..64590108

Molecular Weight (calculated)

63314.0 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.088

Length

564 amino acids

Sequence
(BLAST)

001: MILPHEFRGI FNVSLNLLKT SCSFKNLRSL VMSCDRTDVY LNLVSEVERC LMSYKVSNFS VYKTGDDDSS YSNLLDFSIQ NLRFAESKIP KPIVIIVPES
101: KEQLVSSVMC CIRGSYEIRV RCGGHSYEGT SSVSLEGGSL FVIIDLMILD NVSLDLESGT AWVQGGATLG QTYYAISRAS NVRGFAAGSC PTVGVGGHIS
201: GGGFGFLSRK YGVAADNVVD ALLVDAEGRI VDRESMGEDV FWAIRGGGGG VWGVVYAWKI QLLEVPKIVA SFILSRPGSK RYVAQLVHKW QLVAPKLDDE
301: FYLSVSIRAN ARRDIHEIKA QFNGFYLGPR TKAISILNKV FPELGIQKHD FKEMSWIESI LFFSELDNTS NVSLLKQRYF EKKSYFKAKS DYVKTPISMD
401: GIMATLDVLE KEPKGHIILD PYGGAMERIS EDAIAFPHRK GNLYGIQYLV EWEEKDNSIT KSNAYIEWIR EFYNTMAPFV SSAPREAYVN YIDLDLGVMD
501: NLLINTNAGH AIERARAWGQ KYFLNNYDRL VKAKTIIDPL NVFRHQQGIP PMFASIQEHN YSIE

Best Arabidopsis Sequence Match ( AT2G34790.1 )
(BLAST)

001: MAFAISKRNA TLFLVTLLLI SVPLSSSTLQ QDFVKCLVDN SDVSFPITAS FFSPDQNATL FKEELESTAQ NLRYLTPSNP KPVFIFEPLY ETHVQAAVVC
101: AKKLQLHLRL RSGGHDYEGL SFVAEDETPF VIVDLSKLRQ VDVDLDSNSA WAHAGATIGE VYYRIQEKSQ THGFPAGLCS SLGIGGHLVG GAYGSMMRKF
201: GLGADNVLDA RIVDANGQIL DRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPATVTV FTVTKTLEQD GTKVLYKWEQ IADKLDDDLF IRVIISPASK
301: TTKPGNRTIS MSYQAQFLGD SNRLLQVMQK SFPELGLTKK DCTEMSWIKS VMYIAGFPNS AAPEALLAGK SLFKNHFKAK SDFVKEPIPV EGLEGLWERF
401: LEEDSPLTIW NPYGGMMSRI SESEIPFPHR NGTLFKIQWL STWQDGKVSE ERHMKWIREM YSYMEQYVSK NPRQAYVNYR DLDLGTNEGE TDAREWGAKY
501: YKGNFERLVK IKGEFDPDNF FRHEQSVPTK IG

Arabidopsis Description

MEE23Berberine bridge enzyme-like 15 [Source:UniProtKB/Swiss-Prot;Acc:O64743]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.