Factsheet for Zm00001d049536_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24484	Sorghum	plastid	82.54	82.23
HORVU3Hr1G083890.1	Barley	cytosol, peroxisome	45.77	70.74
TraesCS3D01G367100.1	Wheat	vacuole	66.54	67.92
TraesCS3A01G374600.1	Wheat	vacuole	66.36	67.6
TraesCS3B01G406900.1	Wheat	vacuole	65.62	66.98
TraesCS3A01G374700.1	Wheat	vacuole	65.62	66.73
TraesCS3D01G367200.1	Wheat	vacuole	65.26	66.36
HORVU3Hr1G083840.1	Barley	mitochondrion, plastid	65.81	65.33
Zm00001d049539_P001	Maize	extracellular, vacuole	64.71	64.23
HORVU3Hr1G083860.2	Barley	mitochondrion, plastid	37.87	62.05
Zm00001d022215_P001	Maize	plastid	53.68	55.41
GSMUA_Achr1P24050_001	Banana	golgi	45.4	52.11
Zm00001d024541_P001	Maize	vacuole	52.76	51.43
PGSC0003DMT400009569	Potato	cytosol	43.01	49.16
KRG92465	Soybean	golgi, vacuole	47.06	46.55
KRH34335	Soybean	vacuole	46.32	45.82
Zm00001d046318_P001	Maize	vacuole	44.3	45.39
Solyc04g080400.1.1	Tomato	extracellular	46.51	44.86
Zm00001d037005_P001	Maize	vacuole	42.65	44.27
Zm00001d046322_P001	Maize	extracellular	42.83	43.88
Zm00001d046319_P001	Maize	vacuole	39.89	41.25
Zm00001d037008_P001	Maize	golgi, vacuole	36.21	38.55
Zm00001d016199_P001	Maize	mitochondrion	39.34	38.15
Zm00001d049169_P001	Maize	vacuole	36.58	37.69
Zm00001d037009_P001	Maize	plasma membrane	38.42	35.67
VIT_18s0089g01200.t01	Wine grape	plasma membrane	48.35	22.77

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	ProteinID:AQK50720.1	InterPro:BBE
InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660
GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:K7U150	InterPro:Oxid_FAD_bind_N
InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031	ScanProsite:PS00862	PFscan:PS51387	PANTHER:PTHR32448
PANTHER:PTHR32448:SF52	SUPFAM:SSF56176	SignalP:SignalP-noTM	UniParc:UPI000221807C	EnsemblPlantsGene:Zm00001d049536	EnsemblPlants:Zm00001d049536_P001
EnsemblPlants:Zm00001d049536_T001	SEG:seg	:	:	:	:

Description

Putative FAD-binding Berberine family protein

Coordinates

chr4:+:33730289..33731923

Molecular Weight (calculated)

57985.9 Da

IEP (calculated)

9.614

GRAVY (calculated)

-0.025

Length

544 amino acids

Sequence
(BLAST)

001: MTMHTMVAAA ALALHLFAVS ATRASAQLSS SPPPPVAAAA ICSCLLSNGV TNFSLPSSPS YTPLLDSSIR NLRFELPTVN KPAAIVVPAT RRDLQRAVLC
101: ARNSSLAIRV RSGGHSYEGQ SYTTQNRVPF ALIDLSGLNR VRVDGASGTA WVESGATLGE VYRAVGRSSR ALAFPAGSCA TVGVGGHAAG GGFGLLSRKF
201: GLAADNVLDA VLVDAGGRAL TRDTMHGDVF WAIRGGGGGS WGVVYAWKFR LVPVPDSVTV FSVVRTGPTE LVAGLVHRWQ YVGPSLPDEF YLSAYIPTPT
301: GRSSDGNHSV SFTGQVLGPK RLAMSVLSRT YPELGLAESE LSEVSWIESA AKFAGLSTVA DLTDRQPGVG RYSKSKSDYV RAPISMQDVV KILRYMATGP
401: AEGSMQLDPY GGAMARIGSA ATPFPHRAGY LYSIQYGVSW KASDVDREDE YVGWLRSFYA FMAPYVTKNP RAAYVNYLDL DLGTNDWMNA TGGMSSGSVG
501: HAASWGERYF MTNFGRLVRA KTRADPGNVF NNAQSIPPLY SRNV

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.