Factsheet for VIT_18s0089g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 7
endoplasmic reticulum 5
vacuole 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009569	Potato	cytosol	26.49	64.29
KRG92465	Soybean	golgi, vacuole	29.7	62.36
KRH34335	Soybean	vacuole	29.61	62.18
Solyc04g080400.1.1	Tomato	extracellular	28.23	57.8
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	23.38	53.25
HORVU3Hr1G083890.1	Barley	cytosol, peroxisome	16.02	52.56
Os08t0158300-00	Rice	peroxisome	18.01	51.74
Zm00001d024541_P001	Maize	vacuole	24.76	51.25
Os08t0158400-00	Rice	endoplasmic reticulum, extracellular, vacuole	24.94	51.25
GSMUA_Achr1P24050_001	Banana	golgi	20.95	51.05
TraesCS1D01G426600.1	Wheat	extracellular, vacuole	24.5	50.54
TraesCS1B01G448900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	24.68	50.35
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	24.42	50.27
Os08t0343600-00	Rice	cytosol, peroxisome	23.29	50.19
HORVU1Hr1G091500.1	Barley	extracellular, vacuole	24.24	49.21
KXG24485	Sorghum	extracellular	24.5	49.13
TraesCS3A01G374600.1	Wheat	vacuole	22.68	49.06
TraesCS3D01G367200.1	Wheat	vacuole	22.6	48.78
TraesCS3A01G374700.1	Wheat	vacuole	22.51	48.6
TraesCS3B01G406900.1	Wheat	vacuole	22.42	48.59
TraesCS3D01G367100.1	Wheat	vacuole	22.34	48.41
Zm00001d049536_P001	Maize	vacuole	22.77	48.35
EES14581	Sorghum	extracellular	23.29	48.12
Zm00001d049539_P001	Maize	extracellular, vacuole	22.77	47.99
HORVU3Hr1G083840.1	Barley	mitochondrion, plastid	22.34	47.08
KXG24484	Sorghum	plastid	21.82	46.15
HORVU3Hr1G083860.2	Barley	mitochondrion, plastid	12.9	44.88
Zm00001d022215_P001	Maize	plastid	20.43	44.78
VIT_10s0003g05390.t01	Wine grape	extracellular	20.52	44.3
VIT_12s0028g01790.t01	Wine grape	plastid	20.26	42.94
VIT_12s0028g01780.t01	Wine grape	plasma membrane, vacuole	19.91	42.91
OQU79940	Sorghum	endoplasmic reticulum	20.52	42.63
VIT_10s0003g05420.t01	Wine grape	vacuole	19.22	41.19
VIT_12s0028g01770.t01	Wine grape	plasma membrane, vacuole	19.91	40.35
VIT_10s0003g04730.t01	Wine grape	plasma membrane, vacuole	18.53	40.0
VIT_10s0003g05620.t01	Wine grape	vacuole	18.36	39.92
VIT_10s0003g05550.t01	Wine grape	vacuole	17.92	38.98
VIT_10s0003g05580.t01	Wine grape	plasma membrane, vacuole	17.92	38.98
VIT_03s0017g01490.t01	Wine grape	vacuole	18.27	38.72
VIT_10s0003g05470.t01	Wine grape	vacuole	18.87	38.58
VIT_10s0003g05570.t01	Wine grape	plasma membrane, vacuole	18.27	37.88
VIT_03s0017g01420.t01	Wine grape	cytosol, peroxisome, vacuole	17.92	37.5
VIT_03s0017g01470.t01	Wine grape	vacuole	10.04	37.06
VIT_10s0003g05450.t01	Wine grape	extracellular	18.36	36.93
Os08t0158200-02	Rice	extracellular	1.04	2.27

Protein Annotations

EntrezGene:100261904	wikigene:100261904	Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1
InterPro:BBE	ProteinID:CCB44104	ProteinID:CCB44104.1	UniProt:F6GVW9	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf
InterPro:FAD-bd_2_sub1	EMBL:FN594956	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	EntrezGene:LOC100261904	wikigene:LOC100261904	InterPro:Oxid_FAD_bind_N
PFAM:PF01565	PFAM:PF08031	PFscan:PS51257	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF13
SUPFAM:SSF56176	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00021091D7	ArrayExpress:VIT_18s0089g01200	EnsemblPlantsGene:VIT_18s0089g01200
EnsemblPlants:VIT_18s0089g01200.t01	RefSeq:XP_002264336	RefSeq:XP_002264336.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:29086420..29097009

Molecular Weight (calculated)

128111.0 Da

IEP (calculated)

5.666

GRAVY (calculated)

0.039

Length

1155 amino acids

Sequence
(BLAST)

0001: MVKSLGNLHF LFILTFIAFV VACFCEPTDL ISSCLTRHNV NNFTVLPHKQ NESPAYYRLL NFSIQNLRYA VPTAPKPVAI VLPQSREQLV NTVSCCREGL
0101: FEIRVRCGGH SYEGTSSVVL DGNPFVIIDM MSLNQVLVDL ESETAWVEGG ATLGETYYAV AEASNVHGFS AGSCPTVGVG GHISGGGFGL LSRKYGLAAD
0201: NVVDALLIDA DGRLVDREAM GEDVFWAIRG GGGGVWGIVY AWRIKLLKVP EIVTSCIMSR TGTKLHVAEL VHKWQFIAPR LEPSFYLSVF VGAGLLGGKE
0301: TGVSASFKGF YLGSRSKAMS ILNQVFPELG IEIEECREMS WIESIAYFGD LAEGSSISEL RNRYLQAKLY FKAKSDYVRT PISMKGLRTA LDTLEKEPKG
0401: YVILDPYGGE MERIGSDAIA FPHRKGNLFA IQYMVAWEED SLMSYKYIDW IRGFYKSMTP HVSWGPRAAY VNYMDLDLGV MEMVNSSFSS GDPVEIARAW
0501: GEKYFLNNYE SVFDNLMLYI GWPCAFISPC FCPQLLILYV INLGVKSHLL SIVSTSISIR RSIAMVKYLG NPHSLFIITF IAFVVPCFCD PTDIISSCLI
0601: RHNVYNFTLL PHNGSQSPDY YRLLNFSLQN LRYAVPTAPK PVAIAIPQSL KQLVNSMRCC REGWYEFRVR CGGHSYEGIS SVVPDGNPFV IIDMMSLNQV
0701: SVDVRCGGHS YEGISSVVPD GNPFVIIDMM SLNQVSVDVE SETAWVEGGA TLGETYYAVA EASNVHGFSA GSCPTVGVGG HIAGGGFGLL SRKYGLAADN
0801: VVDALLIDAD GRVLDRKAMG EDVFWAIRGG GGGDWGIVYA WKIKLLKVPE TVTSCIMSRT RTKLHVAELV HKWQFIAPRL EPSFYLSVFV GAGLQGVDEE
0901: TGVSASFKGF YLGSRNEAMS ILNRVFPELG VEKEDCREMS WIESILYFSG LPNGSSISEL RNRYLEDKLY FKAKSDYVRT PISMEGLVTA LDILEMEPKG
1001: SVVLDPYGGE MEKISSDALP FPHRKGNLFS IQYMVAWEED STAMSNKYID WIRGFYKWMM PYVSQGPRAA YVNYMDLDLG QMNSSISSND PVEAARDWGE
1101: KYFLNNYDRL VKVKTCIDPD NVFNNQQGIP PMPTARLNNR SEGLGVSERC MVVSY

Best Arabidopsis Sequence Match ( AT1G30760.2 )
(BLAST)

001: MKLLNKHKNL TTTKQHTKMA FVLMNNTNAF LVTLLLLSLS YIPLSFSTIQ QDFVMCLVDN SDASFPMDSS FFTHDLNASS FKLALETSAQ NLRYLMPSNP
101: KPEFIFEPLY ETHVQAAVLC AKKLKLHLRL RSGGHDYEGL SYVSEMETAF VIVDLSKLRQ ISVDIESNSA WVHAGASIGE VYYRIQEKSK IHGFPAGLCT
201: SLGIGGHIIG GAYGSMMRKF GLGADNVLDA RIVDADGKIL NRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPEIVTV FTVTRTLEQD GTKLLYKWQQ
301: VADKLDEDLF IRVIIQPTSK TPKSKERTIS TSYQGQFLGD ANRLLQVMQR SFPQLGLTKK DCLETSWIKS VMYIAGFPST APSEALLDGK SLFKNYFKAK
401: SDYVEEPIPV EGLEGLWEKL LEEDSPLTIW NPYGGMMAKI PETETPFPHR SGTLFKIQWL TLWQDGKTSE AKHMGWMREM YSYMEQYVSK SPRSAYVNYR
501: DLDLGMNGKG SDAREWGNRY FKGNFERLVE IKAKFDPENF FRHEQSIPTE LE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.