Factsheet for Zm00001d024541_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
mitochondrion 2
vacuole 4
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24485	Sorghum	extracellular	82.97	80.38
Os08t0158400-00	Rice	endoplasmic reticulum, extracellular, vacuole	74.01	73.49
TraesCS1B01G448900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	72.22	71.2
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	71.51	71.12
TraesCS1D01G426600.1	Wheat	extracellular, vacuole	70.97	70.71
HORVU1Hr1G091500.1	Barley	extracellular, vacuole	70.97	69.6
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	50.0	55.03
Zm00001d049536_P001	Maize	vacuole	51.43	52.76
PGSC0003DMT400009569	Potato	cytosol	43.91	51.47
Zm00001d049539_P001	Maize	extracellular, vacuole	49.46	50.37
KRG92465	Soybean	golgi, vacuole	49.64	50.36
KRH34335	Soybean	vacuole	49.46	50.18
Zm00001d022215_P001	Maize	plastid	45.34	48.01
Solyc04g080400.1.1	Tomato	extracellular	46.24	45.74
Zm00001d037005_P001	Maize	vacuole	41.04	43.7
Zm00001d046318_P001	Maize	vacuole	40.5	42.56
Zm00001d046322_P001	Maize	extracellular	40.5	42.56
Zm00001d016199_P001	Maize	mitochondrion	40.32	40.11
Zm00001d046319_P001	Maize	vacuole	36.92	39.16
Zm00001d049169_P001	Maize	vacuole	35.66	37.69
Zm00001d037008_P001	Maize	golgi, vacuole	33.51	36.59
Zm00001d037009_P001	Maize	plasma membrane	37.46	35.67
VIT_18s0089g01200.t01	Wine grape	plasma membrane	51.25	24.76

Protein Annotations

EntrezGene:103641262	Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	ProteinID:AQK41459.1
InterPro:BBE	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614
GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	UniProt:K7UFJ8
InterPro:Oxid_FAD_bind_N	InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031	ScanProsite:PS00862	PFscan:PS51387
PANTHER:PTHR32448	PANTHER:PTHR32448:SF13	SUPFAM:SSF56176	SignalP:SignalP-noTM	UniParc:UPI000221FF44	EnsemblPlantsGene:Zm00001d024541
EnsemblPlants:Zm00001d024541_P001	EnsemblPlants:Zm00001d024541_T001	SEG:seg	:	:	:

Description

Putative FAD-binding Berberine family protein

Coordinates

chr10:+:77459850..77461526

Molecular Weight (calculated)

59263.5 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.009

Length

558 amino acids

Sequence
(BLAST)

001: MAALALLPLV LRLFAVQAGG RVDGRFTACL AAAGVGNVTT RQSPGYAAAL LVSVQNLRFA GAGAPKPAAV VVPASLQELC DAVRCARGAG LALRLRSGGH
101: SYEGQSYTTS DGGGAFAVVD LAALDRVRVD AARRTAWVQA GATLGQAYRA VAAASPALAL SAGSCPTVGS GGHIAGGGFG LLSRKHGLAG DNVVDAVLVD
201: ARGRVLDRAA MGEDVFWAIR GGGGGAWGAV YAWRVRLSPV PERVTAFVVN RPGPARSVAS LVSTWQHVAP WLPDEFYVSA FVGAGLPEAD PGRRAAGVSV
301: TFKGLYLGPA HEAMQILAAR FPEIGLSDLA PREMSWIESV VFFSGLPEGS AVSDLADRVL HTKTYFKAKS DYVRRPTPLD HLVKAVGLLS EQPKAYVILD
401: PYGGAMDRVG SAVLPFPHRK GNIHGIQYMV EWTAGDDERR EEYMGWLRRF YDFMGAYVAT EPRAAYVNYM DLDLGTNDWS DADERSPNPQ VEAARAWGER
501: YFLGNYDRLV RAKTLIDPDN VFRNAQSIPP LGGGAHGMTW STRGISPKAT SNGSTYDI

Best Arabidopsis Sequence Match ( AT1G30760.2 )
(BLAST)

001: MKLLNKHKNL TTTKQHTKMA FVLMNNTNAF LVTLLLLSLS YIPLSFSTIQ QDFVMCLVDN SDASFPMDSS FFTHDLNASS FKLALETSAQ NLRYLMPSNP
101: KPEFIFEPLY ETHVQAAVLC AKKLKLHLRL RSGGHDYEGL SYVSEMETAF VIVDLSKLRQ ISVDIESNSA WVHAGASIGE VYYRIQEKSK IHGFPAGLCT
201: SLGIGGHIIG GAYGSMMRKF GLGADNVLDA RIVDADGKIL NRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPEIVTV FTVTRTLEQD GTKLLYKWQQ
301: VADKLDEDLF IRVIIQPTSK TPKSKERTIS TSYQGQFLGD ANRLLQVMQR SFPQLGLTKK DCLETSWIKS VMYIAGFPST APSEALLDGK SLFKNYFKAK
401: SDYVEEPIPV EGLEGLWEKL LEEDSPLTIW NPYGGMMAKI PETETPFPHR SGTLFKIQWL TLWQDGKTSE AKHMGWMREM YSYMEQYVSK SPRSAYVNYR
501: DLDLGMNGKG SDAREWGNRY FKGNFERLVE IKAKFDPENF FRHEQSIPTE LE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.