Factsheet for Zm00001d022215_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0343600-00	Rice	cytosol, peroxisome	62.24	61.19
Zm00001d049539_P001	Maize	extracellular, vacuole	55.98	53.83
Zm00001d049536_P001	Maize	vacuole	55.41	53.68
Zm00001d024541_P001	Maize	vacuole	48.01	45.34
GSMUA_Achr1P24050_001	Banana	golgi	39.85	44.3
PGSC0003DMT400009569	Potato	cytosol	39.66	43.91
KRG92465	Soybean	golgi, vacuole	43.64	41.82
KRH34335	Soybean	vacuole	43.07	41.27
Solyc04g080400.1.1	Tomato	extracellular	43.83	40.96
Zm00001d046322_P001	Maize	extracellular	39.28	38.98
Zm00001d046318_P001	Maize	vacuole	38.14	37.85
Zm00001d037005_P001	Maize	vacuole	37.19	37.4
Zm00001d037008_P001	Maize	golgi, vacuole	35.86	36.99
Zm00001d046319_P001	Maize	vacuole	35.67	35.74
Zm00001d016199_P001	Maize	mitochondrion	34.91	32.8
Zm00001d049169_P001	Maize	vacuole	31.69	31.63
Zm00001d037009_P001	Maize	plasma membrane	35.1	31.57
VIT_18s0089g01200.t01	Wine grape	plasma membrane	44.78	20.43

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	UniProt:A0A1D6IKF9	InterPro:BBE
InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660
GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	ProteinID:ONM59888.1	InterPro:Oxid_FAD_bind_N
PFAM:PF01565	PFAM:PF08031	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF52	SUPFAM:SSF56176
SignalP:SignalP-noTM	UniParc:UPI00022158D5	EnsemblPlantsGene:Zm00001d022215	EnsemblPlants:Zm00001d022215_P001	EnsemblPlants:Zm00001d022215_T001	SEG:seg

Description

FAD-binding Berberine family protein

Coordinates

chr7:-:172954930..172956602

Molecular Weight (calculated)

56339.2 Da

IEP (calculated)

9.264

GRAVY (calculated)

0.022

Length

527 amino acids

Sequence
(BLAST)

001: MYTNSSPTSL LLGILSILLS THRHVIASQS PRDNGVRARS LSTCLLASGV RNFSMAGSPG YATIFDFSIQ NLRFAAPGFR KPEAVVLPTS RRGLQRAVLC
101: ARSASLAIRV RSGGHSYEGQ SYTVSGGVLD GKAPFVVIDL MNLNKVRVHA ASATAWAESG ATLGEVYHAV AHSSPSNRSS LALTAASCST IGLGGHISGG
201: GFGPVSRKFM LAADNVLDAL LVDAVGRVLD RRAMGEDVFW AIRGGGGGSW GVVYAWKLRL VPVPDTVTVF TPRREGSVDA MAGLVYRWQF VGPALPDEFY
301: LSASLTIGSS SSSSQEDRDL RNVAFTGLVL GPKEMAMSVL NERFPELGLA EAEVSEMSWV ESAARLAGLS SVDELTSRVS KTKYYGKNKS DYVQRPISRD
401: SLAAILRYLS DGPPAGYVTM DPYGGAMARL SATATPFPHR AGNLYALQYG VTWDSDAGEA SVNYIDIDLM GFDESLGPVR LASSVSHARA TWGAAYFTVE
501: NFDRLVRAKT LPMSFTMPKA YHCISGR

Best Arabidopsis Sequence Match ( AT1G30700.1 )
(BLAST)

001: MKYALILVLF FVVFIWQSSS SSANSETFTQ CLTSNSDPKH PISPAIFFSG NGSYSSVLQA NIRNLRFNTT STPKPFLIIA ATHESHVQAA ITCGKRHNLQ
101: MKIRSGGHDY DGLSYVTYSG KPFFVLDMFN LRSVDVDVAS KTAWVQTGAI LGEVYYYIWE KSKTLAYPAG ICPTVGVGGH ISGGGYGNMM RKYGLTVDNT
201: IDARMVDVNG KILDRKLMGE DLYWAINGGG GGSYGVVLAY KINLVEVPEN VTVFRISRTL EQNATDIIHR WQQVAPKLPD ELFIRTVIDV VNGTVSSQKT
301: VRTTFIAMFL GDTTTLLSIL NRRFPELGLV RSDCTETSWI QSVLFWTNIQ VGSSETLLLQ RNQPVNYLKR KSDYVREPIS RTGLESIWKK MIELEIPTMA
401: FNPYGGEMGR ISSTVTPFPY RAGNLWKIQY GANWRDETLT DRYMELTRKL YQFMTPFVSK NPRQSFFNYR DVDLGINSHN GKISSYVEGK RYGKKYFAGN
501: FERLVKIKTR VDSGNFFRNE QSIPVLP

Arabidopsis Description

Berberine bridge enzyme-like 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA85]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.