Factsheet for Zm00001d049539_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14581	Sorghum	extracellular	89.23	87.48
Zm00001d049536_P001	Maize	vacuole	64.23	64.71
Zm00001d022215_P001	Maize	plastid	53.83	55.98
GSMUA_Achr1P24050_001	Banana	golgi	45.8	52.95
Zm00001d024541_P001	Maize	vacuole	50.37	49.46
KRH34335	Soybean	vacuole	48.18	48.0
KRG92465	Soybean	golgi, vacuole	48.18	48.0
PGSC0003DMT400009569	Potato	cytosol	40.88	47.06
Zm00001d046322_P001	Maize	extracellular	43.8	45.2
Zm00001d037005_P001	Maize	vacuole	42.88	44.85
Zm00001d046318_P001	Maize	vacuole	42.15	43.5
Solyc04g080400.1.1	Tomato	extracellular	44.53	43.26
Zm00001d046319_P001	Maize	vacuole	40.15	41.83
Zm00001d037008_P001	Maize	golgi, vacuole	37.04	39.73
Zm00001d016199_P001	Maize	mitochondrion	40.33	39.39
Zm00001d049169_P001	Maize	vacuole	37.96	39.39
Zm00001d037009_P001	Maize	plasma membrane	39.42	36.86
VIT_18s0089g01200.t01	Wine grape	plasma membrane	47.99	22.77

Protein Annotations

EntrezGene:100272856	Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	ProteinID:AQK50722.1
UniProt:B4FR64	InterPro:BBE	EMBL:BT039602	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166
InterPro:IPR016167	InterPro:Oxid_FAD_bind_N	InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031	ScanProsite:PS00862
PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF52	SUPFAM:SSF56176	SignalP:SignalP-noTM	UniParc:UPI00017B7D89
EnsemblPlantsGene:Zm00001d049539	EnsemblPlants:Zm00001d049539_P001	EnsemblPlants:Zm00001d049539_T001	SEG:seg	:	:

Description

FAD-binding Berberine family protein

Coordinates

chr4:+:33796845..33798491

Molecular Weight (calculated)

57572.2 Da

IEP (calculated)

9.316

GRAVY (calculated)

0.026

Length

548 amino acids

Sequence
(BLAST)

001: MSCSIAALVV SLFLSLNQII SCRAAGADDD GAARSLASCL ISHGVTNFTL PTSRSYAGVL NSSISNLRFA LPDVGKPAAV VLPGSRQDLQ RSVLCARSSS
101: LAVRVRSGGH SYEGLSYTSE NRVPFVVIDV ANLNRVRVDR GSATAWAEAG ATLGELYHAV GRSGRSLAFS AGSCSTIGLG GTVSGGGFGL LSRRFGLAAD
201: NVLDAVLVDA DGRALDRAAM GRDVFWAIRG GGGGSWGVVY AWKLRLVPVP RNVTVLSVGR TGPVELVAGL VHRWQLVAPS LPDDFYLSVY LPTGPSSLDG
301: NVSVSFSGQV LGPKHRALSA LRQSFPELGL AESELGEASW LDATAQFAGL DTAADLPNRQ LGSRQYFKGK SDYVRSPISR RAMADIVRYL STGPPRQGQG
401: QGGGYVILDP YGGAMARIAS GDTPFPHRAG TLYGVQYQVY WDEDGELGGR AAAAAGEFCV RWLRSLYAFM APHVSKGPRA AYVNYLDLDL GANNWTAPAG
501: GSSKAAVARA RSSWGAAYFG DNFDRLVGAK TAVDPGNVFN NAQSIPPL

Best Arabidopsis Sequence Match ( AT1G30760.2 )
(BLAST)

001: MKLLNKHKNL TTTKQHTKMA FVLMNNTNAF LVTLLLLSLS YIPLSFSTIQ QDFVMCLVDN SDASFPMDSS FFTHDLNASS FKLALETSAQ NLRYLMPSNP
101: KPEFIFEPLY ETHVQAAVLC AKKLKLHLRL RSGGHDYEGL SYVSEMETAF VIVDLSKLRQ ISVDIESNSA WVHAGASIGE VYYRIQEKSK IHGFPAGLCT
201: SLGIGGHIIG GAYGSMMRKF GLGADNVLDA RIVDADGKIL NRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPEIVTV FTVTRTLEQD GTKLLYKWQQ
301: VADKLDEDLF IRVIIQPTSK TPKSKERTIS TSYQGQFLGD ANRLLQVMQR SFPQLGLTKK DCLETSWIKS VMYIAGFPST APSEALLDGK SLFKNYFKAK
401: SDYVEEPIPV EGLEGLWEKL LEEDSPLTIW NPYGGMMAKI PETETPFPHR SGTLFKIQWL TLWQDGKTSE AKHMGWMREM YSYMEQYVSK SPRSAYVNYR
501: DLDLGMNGKG SDAREWGNRY FKGNFERLVE IKAKFDPENF FRHEQSIPTE LE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.