Factsheet for TraesCS1B01G448900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	93.11	93.94
TraesCS1D01G426600.1	Wheat	extracellular, vacuole	92.58	93.57
HORVU1Hr1G091500.1	Barley	extracellular, vacuole	90.28	89.81
Zm00001d024541_P001	Maize	vacuole	71.2	72.22
KXG24485	Sorghum	extracellular	72.97	71.7
Os08t0158400-00	Rice	endoplasmic reticulum, extracellular, vacuole	71.02	71.53
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	50.18	56.02
KRG92465	Soybean	golgi, vacuole	50.18	51.64
KRH34335	Soybean	vacuole	50.0	51.45
TraesCS3B01G406900.1	Wheat	vacuole	47.17	50.09
PGSC0003DMT400009569	Potato	cytosol	41.87	49.79
Solyc04g080400.1.1	Tomato	extracellular	44.88	45.04
TraesCS7B01G026000.1	Wheat	cytosol	24.56	41.87
TraesCS2B01G017300.1	Wheat	plastid	29.68	41.08
TraesCS2B01G172300.1	Wheat	vacuole	38.16	40.83
TraesCS1B01G469800.1	Wheat	vacuole	38.34	40.33
TraesCS1B01G456900.1	Wheat	vacuole	35.16	39.96
TraesCS2B01G016900.1	Wheat	vacuole	36.4	39.77
TraesCS4B01G391900.1	Wheat	vacuole	35.51	39.26
TraesCS2B01G145300.1	Wheat	plasma membrane	39.58	39.16
TraesCS7B01G273500.1	Wheat	plastid	37.46	39.04
TraesCS7B01G273800.1	Wheat	plasma membrane	35.69	38.77
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	35.69	38.7
TraesCS7B01G273900.1	Wheat	vacuole	35.51	38.65
TraesCS4B01G358600.1	Wheat	golgi	35.69	38.62
TraesCS2B01G572400.1	Wheat	unclear	35.69	38.11
TraesCS4B01G222500.1	Wheat	plasma membrane	37.99	37.99
TraesCS5B01G302700.1	Wheat	vacuole	34.81	37.88
TraesCS7B01G273600.1	Wheat	vacuole	34.28	37.52
TraesCS7B01G273700.1	Wheat	vacuole	34.28	37.31
TraesCS2B01G066900.1	Wheat	nucleus, unclear	34.1	36.62
TraesCS2B01G145500.1	Wheat	vacuole	37.63	36.6
TraesCS2B01G066400.1	Wheat	plastid	34.1	36.55
TraesCS4B01G104000.1	Wheat	vacuole	34.98	36.4
TraesCS2B01G066800.1	Wheat	vacuole	33.75	36.17
TraesCS3B01G070000.1	Wheat	mitochondrion	17.67	35.46
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	33.04	35.42
VIT_18s0089g01200.t01	Wine grape	plasma membrane	50.35	24.68

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016166	InterPro:IPR016167	InterPro:Oxid_FAD_bind_N	InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031
ScanProsite:PS00862	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF13	SUPFAM:SSF56176	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS1B01G448900	EnsemblPlants:TraesCS1B01G448900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:667831048..667832748

Molecular Weight (calculated)

60713.8 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.007

Length

566 amino acids

Sequence
(BLAST)

001: MAISLLFSLL LRLLAVQAAS PGSVGNGNDD DDDSALMTSC LAAAGVRNVT TRRSPAYAAA LAFSVQNLRF AAACAHHGPA AVVVPASLAE LRAAVLCARE
101: TGLVVRLRSG GHSYEGLSYT TDGAGGFVVI DLVALDRVRV DAGTRTAWVQ SGATLGQVYH AVAASSKTLA FSAGSCPTVG SGGHIAGGGF GLLSRKYGLA
201: ADNVIDAVLV DADGRVLDRD SMGEEVFWAI RGGGGGAWGA VYAWRVKLSP VPERVTVFVV NRPGTVESVA RLVSTWQHVA PWLPDEFYLS AFVGAGLPES
301: DGTGISVTFK GFYLGRCQEA LEILSTRFPE IGLADLNPRE MSWIDSVVFF SGLPEGSSTS DLTDRVLHDK NYFKAKSDFV RRPTPFGELE GAIGFLSKQP
401: KAYVILDPYG GAMDRIAAAD LPFPHRRGNI HAIQHLIAWT ADDDGQRQEY MDWLRRFYDL MGAYVSNGPR TAYINYLDLD LGTNNNGSPA HHHPIIGDGD
501: QDGGSPLNSE VEAARTWGER YFLSNYDRLV RAKTTIDPEN VFCNAQSIPP LFVGALQMTR RLAHDI

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.