Factsheet for TraesCS3B01G406900.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G367100.1	Wheat	vacuole	93.06	93.06
TraesCS3A01G374600.1	Wheat	vacuole	93.06	92.88
HORVU3Hr1G083890.1	Barley	cytosol, peroxisome	59.29	89.77
HORVU3Hr1G083840.1	Barley	mitochondrion, plastid	88.74	86.31
HORVU3Hr1G083860.2	Barley	mitochondrion, plastid	48.78	78.31
KXG24484	Sorghum	plastid	67.35	65.75
Zm00001d049536_P001	Maize	vacuole	66.98	65.62
OQU79940	Sorghum	endoplasmic reticulum	60.41	57.91
GSMUA_Achr1P24050_001	Banana	golgi	46.15	51.9
PGSC0003DMT400009569	Potato	cytosol	42.96	48.11
TraesCS1B01G448900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.09	47.17
KRG92465	Soybean	golgi, vacuole	46.15	44.73
KRH34335	Soybean	vacuole	45.78	44.36
TraesCS7B01G026000.1	Wheat	cytosol	27.39	43.98
Solyc04g080400.1.1	Tomato	extracellular	46.15	43.62
TraesCS2B01G172300.1	Wheat	vacuole	42.21	42.53
TraesCS1B01G456900.1	Wheat	vacuole	39.59	42.37
TraesCS1B01G469800.1	Wheat	vacuole	42.21	41.82
TraesCS7B01G273600.1	Wheat	vacuole	39.96	41.2
TraesCS7B01G273500.1	Wheat	plastid	41.46	40.7
TraesCS7B01G273700.1	Wheat	vacuole	39.4	40.38
TraesCS5B01G302700.1	Wheat	vacuole	39.4	40.38
TraesCS4B01G358600.1	Wheat	golgi	39.4	40.15
TraesCS2B01G066800.1	Wheat	vacuole	39.4	39.77
TraesCS2B01G017300.1	Wheat	plastid	30.39	39.61
TraesCS2B01G066900.1	Wheat	nucleus, unclear	39.02	39.47
TraesCS4B01G391900.1	Wheat	vacuole	37.52	39.06
TraesCS2B01G145300.1	Wheat	plasma membrane	41.84	38.99
TraesCS2B01G066400.1	Wheat	plastid	38.46	38.83
TraesCS3B01G070000.1	Wheat	mitochondrion	20.26	38.3
TraesCS2B01G016900.1	Wheat	vacuole	37.15	38.22
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	37.15	37.93
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	37.52	37.88
TraesCS2B01G572400.1	Wheat	unclear	37.52	37.74
TraesCS2B01G145500.1	Wheat	vacuole	40.9	37.46
TraesCS7B01G273900.1	Wheat	vacuole	36.4	37.31
TraesCS7B01G273800.1	Wheat	plasma membrane	36.4	37.24
TraesCS4B01G222500.1	Wheat	plasma membrane	39.21	36.93
TraesCS4B01G104000.1	Wheat	vacuole	36.96	36.21
VIT_18s0089g01200.t01	Wine grape	plasma membrane	48.59	22.42

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016166	InterPro:IPR016167	InterPro:Oxid_FAD_bind_N	InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031
ScanProsite:PS00862	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF52	SUPFAM:SSF56176	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS3B01G406900	EnsemblPlants:TraesCS3B01G406900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:642309723..642311324

Molecular Weight (calculated)

57423.8 Da

IEP (calculated)

8.869

GRAVY (calculated)

-0.111

Length

533 amino acids

Sequence
(BLAST)

001: MRSIATLLQL VCLLLSLHRS PGSGAAATAS NFSSCLVSNG VSNFSLPTSP GYAGLLNSSI FNLRFTLPNV AGPAAIVLPE SRDDLRRAIL CAQTRSLAIR
101: VRSGGHSYEG LSYTTENHVP FVVVDLANLN RVRVEPGSAT AWVESGATVG ELYYAVGRLS RSLAFTAGSG STTGLGGQVS GGGFGLLSRK FGLAADNVLD
201: AALITPDGRV LDRNSMGDDV FWAIRGGGGG SWGVVYAWKL RLVPVPRNVT AFTVGRTGPV ELIAGLLHRW QYVGPNLPDE FYLSVYAPTG STDGNVSISF
301: TGQVLESKEH ALSVLSQSFP ELGLTEPDLS EMSWVESTAK FAGLSTVEDL ANRRRQPKQY SKSKSDYVQA PISRNDMAEI VRHLSAGPTG SIQLDPYGGA
401: MARIERAETP FPHRAGYLYS IQYGVNWNRS QLARAEEFIG WLRSFYRYMA PYVSKDPRAA YVNYLDLDLG VNNWTRAAGG SSPQAVARAT SSWGQAYFGE
501: NFDRLVRAKT VADPGNVFNN AQSIPPLNIR ADE

Best Arabidopsis Sequence Match ( AT1G30760.1 )
(BLAST)

001: MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV
101: LCAKKLKLHL RLRSGGHDYE GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL CTSLGIGGHI IGGAYGSMMR
201: KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT
301: SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE
401: KLLEEDSPLT IWNPYGGMMA KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN YRDLDLGMNG KGSDAREWGN
501: RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.