Factsheet for TraesCS3A01G374600.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G367100.1	Wheat	vacuole	94.19	94.37
TraesCS3B01G406900.1	Wheat	vacuole	92.88	93.06
TraesCS3A01G374700.1	Wheat	vacuole	90.82	90.65
HORVU3Hr1G083890.1	Barley	cytosol, peroxisome	58.8	89.2
HORVU3Hr1G083840.1	Barley	mitochondrion, plastid	87.64	85.4
HORVU3Hr1G083860.2	Barley	mitochondrion, plastid	47.94	77.11
Zm00001d049536_P001	Maize	vacuole	67.6	66.36
KXG24484	Sorghum	plastid	67.23	65.75
OQU79940	Sorghum	endoplasmic reticulum	60.11	57.73
GSMUA_Achr1P24050_001	Banana	golgi	47.38	53.38
TraesCS1A01G418900.1	Wheat	extracellular, vacuole	50.37	47.95
PGSC0003DMT400009569	Potato	cytosol	42.51	47.69
KRG92465	Soybean	golgi, vacuole	46.63	45.27
KRH34335	Soybean	vacuole	46.44	45.09
TraesCS7A01G354100.1	Wheat	vacuole	35.96	44.14
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.19	43.95
TraesCS7A01G126600.1	Wheat	vacuole	42.32	43.46
Solyc04g080400.1.1	Tomato	extracellular	45.88	43.44
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	43.26	43.42
TraesCS1A01G424100.1	Wheat	vacuole	41.39	43.33
TraesCS5A01G261400.1	Wheat	vacuole	41.95	42.67
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	17.42	42.47
TraesCS7A01G354000.1	Wheat	vacuole	40.82	42.17
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	40.26	41.11
TraesCS7A01G353900.1	Wheat	vacuole	39.7	40.85
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	39.33	40.7
TraesCS2A01G052900.1	Wheat	unclear	40.07	40.53
TraesCS2A01G052800.1	Wheat	plastid, vacuole	39.7	40.38
TraesCS2A01G052600.1	Wheat	vacuole	40.07	40.23
TraesCS2A01G051500.1	Wheat	peroxisome	25.66	40.18
TraesCS7A01G400100.1	Wheat	unclear	38.95	39.62
TraesCS2A01G542600.1	Wheat	vacuole	39.14	39.36
TraesCS7A01G353800.1	Wheat	vacuole	38.2	39.23
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	38.2	39.08
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	41.76	38.92
TraesCS3A01G111600.1	Wheat	vacuole	38.58	38.79
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	41.76	38.38
TraesCS2A01G005700.1	Wheat	vacuole	35.21	37.98
TraesCS4A01G081300.1	Wheat	unclear	39.89	37.7
TraesCS4A01G212100.1	Wheat	vacuole	38.02	37.45
VIT_18s0089g01200.t01	Wine grape	plasma membrane	49.06	22.68

Protein Annotations

Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1	InterPro:BBE	InterPro:FAD-bd_2
InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016166	InterPro:IPR016167	InterPro:Oxid_FAD_bind_N	InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031
ScanProsite:PS00862	PFscan:PS51387	PANTHER:PTHR32448	PANTHER:PTHR32448:SF52	SUPFAM:SSF56176	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS3A01G374600	EnsemblPlants:TraesCS3A01G374600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:624057086..624058690

Molecular Weight (calculated)

57469.9 Da

IEP (calculated)

9.255

GRAVY (calculated)

-0.086

Length

534 amino acids

Sequence
(BLAST)

001: MRSIATTLLQ LVCLLLSLHR SPCSGAAATA SNFSSCLVSN GVSNFSVPTS PGYAGLLHSS IFNLRFTLPN VAGPAAIVLP ESRDDLRRAI LCARARSLAI
101: RVRSGGHSYE GLSYTTENHV PFVLVDLANL NRVRVEPGSA TAWAESGATL GELYYAVGRS SYSLAFPAGS GSTTGLGGHV SGGGFGLLSR KFGLAADNVL
201: DAAVITPDGR VLDRSSMGDD VFWAIRGGGG GSWGVVYAWK LRLVPVPRNV TAFTVGRTGP VELIAGLLHR WQYVGPNLPD EFYLSVYAPT GSTDGNVSIS
301: FTGQVLASKD HALSVLSQSF PELGLTERHL SEMSWVESTA KFAGLSTVED LPNRRRQPKQ YSKSKSDYVQ APIWRNDMAE IVRHLSTGPT GSIQLDPYGG
401: AMARVRSAET PFPHRAGNLY SIQYGVSWNR SEVARAEEFI GWLRSFYKFM APYVSKDPRA AYVNYLDLDL GVNNWTQAAG GSSAQAVARA RSSWGEAYFG
501: GNFDRLVRAK TVVDPGNVFN NAQSIPPLNI RAEE

Best Arabidopsis Sequence Match ( AT1G30760.2 )
(BLAST)

001: MKLLNKHKNL TTTKQHTKMA FVLMNNTNAF LVTLLLLSLS YIPLSFSTIQ QDFVMCLVDN SDASFPMDSS FFTHDLNASS FKLALETSAQ NLRYLMPSNP
101: KPEFIFEPLY ETHVQAAVLC AKKLKLHLRL RSGGHDYEGL SYVSEMETAF VIVDLSKLRQ ISVDIESNSA WVHAGASIGE VYYRIQEKSK IHGFPAGLCT
201: SLGIGGHIIG GAYGSMMRKF GLGADNVLDA RIVDADGKIL NRAAMGEDVF WAIRGGGGGS FGVILAWKIK LVPVPEIVTV FTVTRTLEQD GTKLLYKWQQ
301: VADKLDEDLF IRVIIQPTSK TPKSKERTIS TSYQGQFLGD ANRLLQVMQR SFPQLGLTKK DCLETSWIKS VMYIAGFPST APSEALLDGK SLFKNYFKAK
401: SDYVEEPIPV EGLEGLWEKL LEEDSPLTIW NPYGGMMAKI PETETPFPHR SGTLFKIQWL TLWQDGKTSE AKHMGWMREM YSYMEQYVSK SPRSAYVNYR
501: DLDLGMNGKG SDAREWGNRY FKGNFERLVE IKAKFDPENF FRHEQSIPTE LE

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30760]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.