Factsheet for VIT_10s0003g05390.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
endoplasmic reticulum 5
extracellular 4
vacuole 6
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

extracellular: 26106900

msms PMID: 26106900 doi

C Guillier, M Gamm, G Lucchi, C Truntzer, D Pecqueur, P Ducoroy, M Adrian, MC Héloir

Clinical Innovation Proteomic Platform - CLIPP, 15 Boulevard Maréchal de Lattre de Tassigny, BP37013, F-21070 Dijon cedex, France., CNRS, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;, Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56394	Soybean	vacuole	61.31	62.24
KRH62528	Soybean	endoplasmic reticulum, golgi, vacuole	59.07	59.85
VIT_12s0028g01780.t01	Wine grape	plasma membrane, vacuole	59.63	59.51
KRH56395	Soybean	nucleus	58.5	59.17
Solyc10g054480.1.1	Tomato	plastid	33.27	58.55
PGSC0003DMT400086243	Potato	vacuole	57.38	58.37
Solyc02g070060.1.1	Tomato	vacuole	57.38	58.37
VIT_12s0028g01790.t01	Wine grape	plastid	58.88	57.8
VIT_12s0028g01770.t01	Wine grape	plasma membrane, vacuole	60.56	56.84
VIT_10s0003g05420.t01	Wine grape	vacuole	56.82	56.4
CDX79010	Canola	cytosol	27.85	55.81
Bra033740.1-P	Field mustard	golgi	56.26	55.03
GSMUA_Achr3P23450_001	Banana	plasma membrane, vacuole	45.61	54.46
AT4G20860.1	Thale cress	vacuole	53.83	54.34
Bra013501.1-P	Field mustard	vacuole	54.02	54.32
CDX79034	Canola	plastid	52.71	54.13
VIT_10s0003g05620.t01	Wine grape	vacuole	53.27	53.67
AT5G44360.2	Thale cress	golgi	54.95	53.65
CDX82785	Canola	endoplasmic reticulum, extracellular, vacuole	52.34	53.64
CDX82800	Canola	extracellular	52.15	53.45
CDY69774	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	52.15	53.45
VIT_10s0003g05550.t01	Wine grape	vacuole	52.9	53.3
Bra013478.1-P	Field mustard	endoplasmic reticulum, vacuole	51.78	53.07
VIT_10s0003g05580.t01	Wine grape	plasma membrane, vacuole	52.34	52.73
TraesCS7A01G353600.1	Wheat	cytosol, nucleus, peroxisome	21.31	52.05
CDY68914	Canola	golgi, plastid	41.87	51.73
VIT_03s0017g01470.t01	Wine grape	vacuole	30.09	51.44
VIT_10s0003g05570.t01	Wine grape	plasma membrane, vacuole	53.46	51.35
GSMUA_Achr3P23470_001	Banana	extracellular, plasma membrane, vacuole	39.81	51.33
TraesCS1D01G443200.1	Wheat	cytosol	30.28	51.27
TraesCS7D01G369200.1	Wheat	extracellular, vacuole	50.28	50.85
VIT_10s0003g04730.t01	Wine grape	plasma membrane, vacuole	50.47	50.47
TraesCS7A01G354100.1	Wheat	vacuole	40.93	50.34
TraesCS7B01G026000.1	Wheat	cytosol	31.21	50.3
HORVU7Hr1G089280.1	Barley	mitochondrion, peroxisome, plasma membrane	50.09	49.81
VIT_10s0003g05470.t01	Wine grape	vacuole	52.34	49.56
VIT_03s0017g01490.t01	Wine grape	vacuole	50.09	49.17
TraesCS7D01G368500.1	Wheat	plasma membrane, vacuole	47.48	49.03
Os06t0548100-00	Rice	golgi	48.97	48.97
TraesCS7D01G124500.1	Wheat	plasma membrane, vacuole	47.29	48.65
TraesCS5D01G268800.1	Wheat	vacuole	47.66	48.57
TraesCS7A01G126600.1	Wheat	vacuole	47.1	48.46
EER89910	Sorghum	vacuole	47.85	48.39
KXG20147	Sorghum	vacuole	48.41	48.32
KXG20146	Sorghum	extracellular	48.04	48.22
TraesCS5A01G261400.1	Wheat	vacuole	47.29	48.19
VIT_03s0017g01420.t01	Wine grape	cytosol, peroxisome, vacuole	49.72	48.19
Zm00001d037005_P001	Maize	vacuole	47.1	48.09
Zm00001d046322_P001	Maize	extracellular	47.48	47.83
Zm00001d046318_P001	Maize	vacuole	47.1	47.46
TraesCS7A01G353700.1	Wheat	extracellular, vacuole	47.1	47.37
HORVU7Hr1G089270.1	Barley	vacuole	46.92	47.18
Os06t0549900-01	Rice	extracellular	46.54	47.16
EER89909	Sorghum	extracellular, plasma membrane, vacuole	46.36	47.15
TraesCS2B01G172300.1	Wheat	vacuole	46.54	47.07
TraesCS1D01G338700.1	Wheat	plasma membrane	47.1	47.01
TraesCS1A01G433900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.92	46.74
GSMUA_Achr3P23440_001	Banana	extracellular, plasma membrane	44.86	46.69
TraesCS7B01G273500.1	Wheat	plastid	47.29	46.59
Os06t0549633-00	Rice	vacuole	45.98	46.59
TraesCS1B01G456900.1	Wheat	vacuole	43.36	46.59
VIT_10s0003g05450.t01	Wine grape	extracellular	49.91	46.52
TraesCS1B01G469800.1	Wheat	vacuole	46.73	46.47
TraesCS7A01G354000.1	Wheat	vacuole	44.67	46.23
Zm00001d046319_P001	Maize	vacuole	45.42	46.2
TraesCS2D01G151500.1	Wheat	vacuole	45.61	46.12
Os06t0548200-01	Rice	extracellular	45.98	46.07
TraesCS2B01G017300.1	Wheat	plastid	35.14	45.97
HORVU7Hr1G089190.1	Barley	vacuole	45.05	45.9
TraesCS7D01G368700.1	Wheat	unclear	44.3	45.84
HORVU1Hr1G092680.1	Barley	golgi, vacuole	45.79	45.71
TraesCS7B01G273800.1	Wheat	plasma membrane	44.49	45.68
TraesCS7A01G353900.1	Wheat	vacuole	44.3	45.66
Os06t0549600-01	Rice	extracellular	44.86	45.63
TraesCS7B01G388200.1	Wheat	extracellular, plasma membrane, vacuole	44.49	45.59
TraesCS7D01G369000.1	Wheat	extracellular, vacuole	44.3	45.58
TraesCS1D01G433600.1	Wheat	vacuole	45.98	45.56
TraesCS7B01G273600.1	Wheat	vacuole	43.93	45.45
TraesCS7A01G484600.1	Wheat	extracellular, plasma membrane, vacuole	44.3	45.4
TraesCS7A01G353800.1	Wheat	vacuole	44.11	45.38
HORVU7Hr1G089160.3	Barley	vacuole	44.49	45.33
Os06t0549300-00	Rice	extracellular	44.3	45.32
TraesCS1A01G424100.1	Wheat	vacuole	43.18	45.29
EER89907	Sorghum	plasma membrane, vacuole	44.49	45.25
Os06t0548800-01	Rice	extracellular	44.86	45.2
TraesCS7B01G273900.1	Wheat	vacuole	43.93	45.19
TraesCS4B01G391900.1	Wheat	vacuole	43.18	45.12
TraesCS3B01G070000.1	Wheat	mitochondrion	23.74	45.04
TraesCS7D01G472000.1	Wheat	vacuole	43.93	45.02
TraesCS7B01G273700.1	Wheat	vacuole	43.74	45.0
EER89908	Sorghum	plasma membrane, vacuole	45.23	44.9
TraesCS2A01G051500.1	Wheat	peroxisome	28.6	44.87
TraesCS2A01G542600.1	Wheat	vacuole	44.49	44.82
TraesCS7D01G368800.1	Wheat	vacuole	43.55	44.81
TraesCS2B01G572400.1	Wheat	unclear	44.3	44.72
TraesCS7D01G369100.1	Wheat	plasma membrane, vacuole	47.1	44.6
HORVU2Hr1G000540.1	Barley	golgi, vacuole	45.23	44.57
EES13185	Sorghum	vacuole	45.23	44.32
KXG26140	Sorghum	plasma membrane	44.3	44.3
TraesCS2D01G006000.1	Wheat	plastid	41.87	44.27
TraesCS4B01G222500.1	Wheat	plasma membrane	46.73	44.17
TraesCS4D01G223000.1	Wheat	plasma membrane	46.73	44.17
HORVU2Hr1G122590.1	Barley	vacuole	44.11	44.11
TraesCS5A01G555000.1	Wheat	plasma membrane, vacuole	42.43	43.99
TraesCS5D01G309100.1	Wheat	vacuole	42.8	43.95
TraesCS4A01G081300.1	Wheat	unclear	46.36	43.89
TraesCSU01G034600.1	Wheat	vacuole	42.06	43.69
TraesCS5B01G302700.1	Wheat	vacuole	42.43	43.65
HORVU4Hr1G086520.1	Barley	plasma membrane, vacuole	42.06	43.52
KXG20949	Sorghum	vacuole	43.93	43.44
TraesCS2A01G052700.1	Wheat	extracellular, plasma membrane, plastid, vacuole	42.43	43.4
TraesCS4B01G358600.1	Wheat	golgi	42.43	43.4
Zm00001d037008_P001	Maize	golgi, vacuole	41.31	43.25
KXG28418	Sorghum	vacuole	42.62	43.18
TraesCS7D01G368900.1	Wheat	cytosol, peroxisome, plasma membrane	19.25	43.1
TraesCS2A01G052600.1	Wheat	vacuole	42.8	43.05
TraesCS2B01G066900.1	Wheat	nucleus, unclear	42.24	42.88
Os02t0235900-01	Rice	plasma membrane, vacuole	45.42	42.86
TraesCS7A01G400100.1	Wheat	unclear	42.06	42.86
TraesCS2D01G052300.1	Wheat	plastid	42.06	42.69
HORVU4Hr1G062830.1	Barley	mitochondrion, peroxisome, plasma membrane	46.36	42.69
TraesCS2B01G145300.1	Wheat	plasma membrane	45.61	42.66
TraesCS2A01G052900.1	Wheat	unclear	42.06	42.61
TraesCS2A01G052800.1	Wheat	plastid, vacuole	41.68	42.48
TraesCS2B01G016900.1	Wheat	vacuole	41.12	42.47
HORVU2Hr1G008330.1	Barley	extracellular, plasma membrane, vacuole	42.06	42.45
HORVU2Hr1G008270.1	Barley	peroxisome	24.67	42.44
TraesCS2D01G126200.1	Wheat	plasma membrane, vacuole	45.61	42.43
TraesCS2B01G066400.1	Wheat	plastid	41.87	42.42
TraesCS2D01G052500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	41.87	42.42
Zm00001d049169_P001	Maize	vacuole	41.87	42.42
TraesCS7D01G393900.1	Wheat	vacuole	41.31	42.26
Zm00001d016199_P001	Maize	mitochondrion	44.3	42.25
TraesCS2D01G052700.1	Wheat	unclear	41.68	42.23
TraesCS2A01G123200.1	Wheat	plasma membrane, vacuole	45.05	42.06
TraesCS2A01G005700.1	Wheat	vacuole	38.88	42.02
TraesCS2D01G543700.1	Wheat	unclear	43.93	41.89
TraesCS4A01G212100.1	Wheat	vacuole	42.43	41.88
HORVU2Hr1G008300.1	Barley	plastid	41.12	41.83
HORVU3Hr1G020240.1	Barley	extracellular, plasma membrane, vacuole	41.31	41.7
TraesCS2B01G066800.1	Wheat	vacuole	41.12	41.67
HORVU2Hr1G021650.2	Barley	golgi, mitochondrion, plastid, vacuole	45.05	41.62
TraesCS4D01G101000.1	Wheat	golgi	42.24	41.62
HORVU4Hr1G017270.1	Barley	vacuole	42.06	41.44
TraesCS4B01G104000.1	Wheat	vacuole	42.06	41.36
HORVU2Hr1G000530.1	Barley	plasma membrane, vacuole	33.83	41.32
TraesCS3B01G132200.1	Wheat	extracellular, plasma membrane, vacuole	40.75	41.29
TraesCS3D01G113700.1	Wheat	extracellular, plasma membrane, vacuole	40.56	41.18
HORVU7Hr1G093940.1	Barley	vacuole	40.75	41.13
HORVU2Hr1G008310.1	Barley	golgi, vacuole	41.68	41.07
TraesCS3A01G111600.1	Wheat	vacuole	40.75	41.05
HORVU2Hr1G013930.1	Barley	golgi, vacuole	41.87	41.03
KXG29886	Sorghum	mitochondrion	44.3	40.79
TraesCS2A01G123400.1	Wheat	plasma membrane, vacuole	44.11	40.62
Zm00001d037009_P001	Maize	plasma membrane	44.3	40.44
TraesCS2D01G126400.1	Wheat	golgi, vacuole	43.74	40.41
HORVU7Hr1G089210.1	Barley	mitochondrion	46.17	40.23
TraesCS2B01G145500.1	Wheat	vacuole	43.74	40.21
Os11t0495950-00	Rice	plasma membrane, vacuole	40.56	40.19
TraesCS2D01G052400.1	Wheat	vacuole	29.53	39.3
KXG29885	Sorghum	plastid	36.26	38.72
HORVU7Hr1G089260.1	Barley	mitochondrion	33.08	36.42
HORVU7Hr1G026630.1	Barley	plastid	32.9	34.71
VIT_18s0089g01200.t01	Wine grape	plasma membrane	44.3	20.52

Protein Annotations

EntrezGene:100266314	wikigene:100266314	Gene3D:3.30.43.10	Gene3D:3.30.465.50	Gene3D:3.40.462.20	MapMan:50.1.1
InterPro:BBE	ProteinID:CCB55875	ProteinID:CCB55875.1	UniProt:F6HM00	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf
InterPro:FAD-bd_2_sub1	EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016614	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	InterPro:IPR016166	InterPro:IPR016167	EntrezGene:LOC100266314	wikigene:LOC100266314	InterPro:Oxid_FAD_bind_N
InterPro:Oxy_OxRdtase_FAD_BS	PFAM:PF01565	PFAM:PF08031	ScanProsite:PS00862	PFscan:PS51387	PANTHER:PTHR32448
PANTHER:PTHR32448:SF36	SUPFAM:SSF56176	SignalP:SignalP-noTM	UniParc:UPI00015CAE88	ArrayExpress:VIT_10s0003g05390	EnsemblPlantsGene:VIT_10s0003g05390
EnsemblPlants:VIT_10s0003g05390.t01	unigene:Vvi.9974	RefSeq:XP_002267029	RefSeq:XP_002267029.2	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:9950134..9951741

Molecular Weight (calculated)

60288.7 Da

IEP (calculated)

8.930

GRAVY (calculated)

-0.122

Length

535 amino acids

Sequence
(BLAST)

001: MGCFTLTVFL LMLSVSSSTS ATVNDHFLQC MSIHSTPHAK SAQIIHQPNS SLYSYFLQSS QQNPRWLNAS TSKPLLILTP FHESEIQAAI LCSRKQGLQI
101: RTRSGGHDYE GLSYLSEAPF IIVDLIYLGT VSVDIEDETA WVQAGATLGE LYYSISMKSH IHGFPAGICP TVGVGGHFSG GGFGTLLRKY GLAADNILDA
201: YLIDVNGRIL NRESMGESLF WAIRGGGGAS FGILVSWKIK LVRVPPTVTV FTIHKTLEQG ATKLVHRWQY VADQLHEDIF IRIIIQDVGG QSSGKKMTIQ
301: ASFNSLFLGG VDKLIPLMGK SFPELGLQAG DCTEMTWIES VLYFAGFPRG NSLDVLLNRT HPDRSYFKAK SDYVKEPIPE VGLEGVWERF LKEQIVFMIM
401: DPYGGRMNKI SESELPFPHR KGNLYNIQYL VKWEVNEAKI SNKHVHWIRM LFQYMRPFVS KSPRAAYLNY RDLDLGINNQ DNASYSQAWV WGTKYFKGNF
501: FRLAWVKAKV DPDNFFRNEQ SIPPLPHMEN KKKVV

Best Arabidopsis Sequence Match ( AT5G44360.2 )
(BLAST)

001: MLYLCNFKHK KSKTLKMRTL EAFALSLFLV FLVKWVNSDS SSSPSKDQFL SCMSTHSDSS FINPKSFIHK PDSRVYTDFS QSLISQNYRF LTLNFTSQKP
101: ILIVTPRTDT EIQRSLLCSR KLGVKVRTKS GGHDYEGLSY LSLHSPFIIL DLVNVRSIEI NLADETAWVG AGATIGELYY KIAKSSKIHG FPAGTCPSVG
201: VGGHFSGGGF GAMMRKHGLA ADNVVDARFV DANGRIYNSR REMGEDLFWA IRGGGAASFG VVLSWKVKLV RVPEKVTCFR RNLPLTQNMT KIVHRWQQIA
301: AELDDNLFIR VIVSISGGSV QTTFQANYLG GIDKLIPLMN QKFPELGLTF QDCSEMTWID SIMYFNWKKG QPLETLLDRG QRYNDLYFKA KSDFVKNPIP
401: EIGLEGIWTR FHEVESPIMI MEPLGGKMYE IGETETPFPH RRGNLYNIQY MVKWRLKDIG VMEKHVTWMR LLYRYMRVYV SASPRGAYLN YRDLDLGMNR
501: GVNTSFEDAK LWGFRYFGSN FKRLAIVKGK IDPTNFFRNE QSVPPLIV

Arabidopsis Description

FAD-binding Berberine family protein [Source:TAIR;Acc:AT5G44360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.