Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029152_P001 | Maize | plastid | 26.58 | 36.49 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 28.51 | 26.14 |
| TraesCS2B01G198300.1 | Wheat | cytosol | 11.31 | 12.39 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 11.88 | 9.97 |
| TraesCS2B01G372300.1 | Wheat | plastid | 11.88 | 9.51 |
| TraesCS3B01G136600.1 | Wheat | mitochondrion | 12.33 | 8.92 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 5.32 | 8.87 |
| TraesCS2B01G595200.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 8.48 | 8.17 |
| TraesCS1B01G200700.1 | Wheat | plastid | 7.58 | 8.09 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 9.28 | 7.27 |
Protein Annotations
| Gene3D:1.10.1420.10 | Gene3D:3.30.420.110 | MapMan:35.1 | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | GO:GO:0032300 |
| InterPro:IPR036678 | InterPro:Msh2 | InterPro:MutS_con_dom_sf | PFAM:PF05188 | PFAM:PF05192 | PANTHER:PTHR11361 |
| PANTHER:PTHR11361:SF35 | SUPFAM:SSF48334 | EnsemblPlantsGene:TraesCS3B01G287700 | EnsemblPlants:TraesCS3B01G287700.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:-:461742337..461744991
Molecular Weight (calculated)
99016.4 Da
IEP (calculated)
6.910
GRAVY (calculated)
-0.204
Length
884 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDGLPESRA TVNDFKTTGS FSPSRGMFSA VAARAETLPA LELETLKPNR CLTECSHDDA NKVTHVVVLD ASPLTTAQLN NILCNTSPCA MPWVCEDTDD
101: EQIRKGGVMQ PLWPPRAPPS TWQLRFVEHT IANSTELKPW PDPWMSKSSG SGSRDKPPWA QNAVSVGKSD KLRELYEKSG SSWRLTKSGT PGTIGSFEDI
201: RCANNVMQYS PVTTALFPVF CGGHHSFPRP CYKERCSFLQ ISQLYVGLSC VNMTNQKLGL TEFPEDSRFT NVESALVALH CKECLFLADF EKSIDLDASR
301: NCSILAAERK KAEFKSGDLV QDLGRIIKGS VEPVRDLLSQ FDYALGALGA LVLYDGLLAD DTNYGNYTIE KYNLDCYLRL ASAVVRTLNI VEEKTDGNNK
401: FSLFAFMNRV CTARMGQGLL NKWLYVNEVN NRLDMVQAFT ENPELRRGLR QQLTRISDLD RLTHTLHKKS ANQPVVKLYQ SCSRISYIKG VLQQYNGQFS
501: RFRTRFLGSF EEWITENRYV PYVRPDITTS EGGDILLQGG WHPYKVQSVE NYMKLSMGNI TRAFLELHIS PSGQPDYDRH VASAPGMFMR SQFGIAVFEF
601: SPDGSVGHLP LQFPLFVQTN RIEIYSPWIQ CSPFLCWFQS ATRANHEWTP CITMFSCICK HVQMFIAGLS YEMNHQPQAK ERVQHDIGFV LESSCRLLPI
701: NCPGDLFTGE AKACTCQFVV SYTSCFRGIL CMDKNEMSHS SVAAPFGNEL LFCSFELTIC KHVILSYDPG GPTLLLDGIG GIHEFHLIII GLRVSRISRE
801: GECNTPTMGC HPTVATWAWA TRWANHWRLS GTWATYAVGR AHEEGIELIE TSESSRPPAP VPHPPATYLI PLLLILTPNS PCIS
101: EQIRKGGVMQ PLWPPRAPPS TWQLRFVEHT IANSTELKPW PDPWMSKSSG SGSRDKPPWA QNAVSVGKSD KLRELYEKSG SSWRLTKSGT PGTIGSFEDI
201: RCANNVMQYS PVTTALFPVF CGGHHSFPRP CYKERCSFLQ ISQLYVGLSC VNMTNQKLGL TEFPEDSRFT NVESALVALH CKECLFLADF EKSIDLDASR
301: NCSILAAERK KAEFKSGDLV QDLGRIIKGS VEPVRDLLSQ FDYALGALGA LVLYDGLLAD DTNYGNYTIE KYNLDCYLRL ASAVVRTLNI VEEKTDGNNK
401: FSLFAFMNRV CTARMGQGLL NKWLYVNEVN NRLDMVQAFT ENPELRRGLR QQLTRISDLD RLTHTLHKKS ANQPVVKLYQ SCSRISYIKG VLQQYNGQFS
501: RFRTRFLGSF EEWITENRYV PYVRPDITTS EGGDILLQGG WHPYKVQSVE NYMKLSMGNI TRAFLELHIS PSGQPDYDRH VASAPGMFMR SQFGIAVFEF
601: SPDGSVGHLP LQFPLFVQTN RIEIYSPWIQ CSPFLCWFQS ATRANHEWTP CITMFSCICK HVQMFIAGLS YEMNHQPQAK ERVQHDIGFV LESSCRLLPI
701: NCPGDLFTGE AKACTCQFVV SYTSCFRGIL CMDKNEMSHS SVAAPFGNEL LFCSFELTIC KHVILSYDPG GPTLLLDGIG GIHEFHLIII GLRVSRISRE
801: GECNTPTMGC HPTVATWAWA TRWANHWRLS GTWATYAVGR AHEEGIELIE TSESSRPPAP VPHPPATYLI PLLLILTPNS PCIS
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.