Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 95.38 | 100.0 |
| TraesCS2D01G352400.1 | Wheat | cytosol | 85.78 | 97.23 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 73.37 | 92.78 |
| EES11671 | Sorghum | plastid | 78.53 | 78.82 |
| Zm00001d026647_P005 | Maize | nucleus | 76.72 | 63.3 |
| VIT_16s0100g01310.t01 | Wine grape | plastid | 56.43 | 56.08 |
| KRH35336 | Soybean | cytosol | 21.56 | 56.0 |
| KRG91481 | Soybean | plastid | 53.8 | 55.51 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 52.72 | 53.84 |
| Solyc03g025890.1.1 | Tomato | nucleus | 54.44 | 53.8 |
| CDY50199 | Canola | plastid | 52.17 | 53.58 |
| CDX92716 | Canola | plastid | 52.63 | 53.21 |
| Bra019156.1-P | Field mustard | plastid | 52.17 | 53.14 |
| VIT_00s0485g00020.t01 | Wine grape | mitochondrion, plastid | 20.11 | 47.23 |
| VIT_00s0388g00030.t01 | Wine grape | plastid | 20.2 | 45.51 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 11.23 | 23.4 |
| TraesCS2B01G198300.1 | Wheat | cytosol | 16.49 | 22.55 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 18.48 | 21.16 |
| TraesCS3B01G136600.1 | Wheat | mitochondrion | 19.38 | 17.51 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 14.13 | 13.83 |
| TraesCS1B01G200700.1 | Wheat | plastid | 9.33 | 12.44 |
| TraesCS3B01G287700.1 | Wheat | cytosol | 9.51 | 11.88 |
| TraesCS2B01G595200.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 9.24 | 11.11 |
| EES13125 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.2 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N |
| InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf |
| InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR016151 | InterPro:IPR036678 | InterPro:MutS_con_dom_sf |
| InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 | PFAM:PF05190 | PFAM:PF05192 |
| PIRSF:PIRSF037677 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF122 | SMART:SM00533 | SMART:SM00534 |
| SUPFAM:SSF48334 | SUPFAM:SSF52540 | SUPFAM:SSF55271 | EnsemblPlantsGene:TraesCS2B01G372300 | EnsemblPlants:TraesCS2B01G372300.1 | TIGR:cd03287 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:530785316..530792147
Molecular Weight (calculated)
118430.0 Da
IEP (calculated)
7.108
GRAVY (calculated)
-0.113
Length
1104 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKQPKQQVL SRFFSTKPPP PTPTAAAQAQ PVAPPPPPKS PVSTVASFSP AKRARALXXX XXXXXKRPRP SPSLVSTIPP REAAVRRALL EPSPPGSNPS
0101: GGGGGGRGYT PLEQQVVDLK ARHPDVLLMV EVGYRFRFFG EDAAVAASVL GIVAHPDRSF LTASVPTFRL GFHVRRLVDA GHKVGVVRQT ETAAIKAAAA
0201: ARGGGGAAPF ARELSAVYTR ATIEAGAGEL EGGGAPEEGS RYLVCVVDKE VDAVGREGFE VKVGVVAIEV STGEVVHGEF MDGAARSGLE AVLLGLAPVE
0301: VILGTPLSFP TEKLMRAYAG PASNVRVECT SRDCFSEGGA LAELMSLFEK SEVNSPTIGN DKQMEINEED NNLRGMEGVM AMPELVAQAM ALSVRYLKGF
0401: GMERLICFGS LFRPFTANTE MSLSANALQQ LEVLKNNSDG SIEGSLFQTM NNTXXXXTAF GSRLFRHWLT HPLCDRNLIC ARHDAISEIS ESMGSRQDSV
0501: SIRQDEGDGC CAASARSDLS TILSSVLTML GRSLDSQRGI TRIFHCKATA KEFIGVIQAI LTAGKQLRKL VLEDTDNVSS QHRTVHSSLL RRLISTASSS
0601: AVLANAVKLL SCLDKDAADQ GDMINLLISS VDQFPEVAEG HVTVEMAKQK LDLLIVEYRK QLGMRSLEYK TVSGTAYLIE LPVDRRVPSN WMKVNSTKKT
0701: IRYHTPEVLK NLDNLLLAKE ELAVICRKTW HKFLMDFGKY YAQFQASVES LAALDCLYSL ATLAKQNNYV QPNFVPENEA SQIHIKDGRH PVLESLLGDN
0801: FVPNDTNLHA DGQYCQIVTG PNMGGKSCYI RQVALITIMA QVGSFVPASS ATLHVVDGIY TRMGASDSIQ QGTSTFYEEM NEASSILQNC SSRSLVIIDE
0901: LGRGTSTHDG VAIAYATLHY LLKNKKCIVI FVTHYPKILD IQSEFEGSVG AYHVSYLSTR KLLQISDEMM GNGTETEDLG EITFLYKLVA GASDRSFGLN
1001: VALLAQLPFR CIKRASVMAA KLQEEMSKRD INKLVRLMDE PSSDGPRESS SEVGLLCAEP HQGLMEACRR ILHDMRSAQS NNDITNTLSC LKSAQEIASK
1101: MIKG
0101: GGGGGGRGYT PLEQQVVDLK ARHPDVLLMV EVGYRFRFFG EDAAVAASVL GIVAHPDRSF LTASVPTFRL GFHVRRLVDA GHKVGVVRQT ETAAIKAAAA
0201: ARGGGGAAPF ARELSAVYTR ATIEAGAGEL EGGGAPEEGS RYLVCVVDKE VDAVGREGFE VKVGVVAIEV STGEVVHGEF MDGAARSGLE AVLLGLAPVE
0301: VILGTPLSFP TEKLMRAYAG PASNVRVECT SRDCFSEGGA LAELMSLFEK SEVNSPTIGN DKQMEINEED NNLRGMEGVM AMPELVAQAM ALSVRYLKGF
0401: GMERLICFGS LFRPFTANTE MSLSANALQQ LEVLKNNSDG SIEGSLFQTM NNTXXXXTAF GSRLFRHWLT HPLCDRNLIC ARHDAISEIS ESMGSRQDSV
0501: SIRQDEGDGC CAASARSDLS TILSSVLTML GRSLDSQRGI TRIFHCKATA KEFIGVIQAI LTAGKQLRKL VLEDTDNVSS QHRTVHSSLL RRLISTASSS
0601: AVLANAVKLL SCLDKDAADQ GDMINLLISS VDQFPEVAEG HVTVEMAKQK LDLLIVEYRK QLGMRSLEYK TVSGTAYLIE LPVDRRVPSN WMKVNSTKKT
0701: IRYHTPEVLK NLDNLLLAKE ELAVICRKTW HKFLMDFGKY YAQFQASVES LAALDCLYSL ATLAKQNNYV QPNFVPENEA SQIHIKDGRH PVLESLLGDN
0801: FVPNDTNLHA DGQYCQIVTG PNMGGKSCYI RQVALITIMA QVGSFVPASS ATLHVVDGIY TRMGASDSIQ QGTSTFYEEM NEASSILQNC SSRSLVIIDE
0901: LGRGTSTHDG VAIAYATLHY LLKNKKCIVI FVTHYPKILD IQSEFEGSVG AYHVSYLSTR KLLQISDEMM GNGTETEDLG EITFLYKLVA GASDRSFGLN
1001: VALLAQLPFR CIKRASVMAA KLQEEMSKRD INKLVRLMDE PSSDGPRESS SEVGLLCAEP HQGLMEACRR ILHDMRSAQS NNDITNTLSC LKSAQEIASK
1101: MIKG
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Arabidopsis Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.