Factsheet for Solyc03g025890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g01310.t01	Wine grape	plastid	66.16	66.52
KRH35336	Soybean	cytosol	24.08	63.29
KRG91481	Soybean	plastid	60.16	62.8
AT4G25540.1	Thale cress	nucleus, plastid	60.43	62.44
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	25.87	61.49
CDX92716	Canola	plastid	59.71	61.08
CDY50199	Canola	plastid	58.73	61.02
Bra019156.1-P	Field mustard	plastid	59.18	60.98
VIT_00s0388g00030.t01	Wine grape	plastid	26.14	59.59
TraesCS2D01G352400.1	Wheat	cytosol	49.15	56.37
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	52.64	55.84
HORVU2Hr1G085940.21	Barley	cytosol	43.06	55.1
TraesCS2B01G372300.1	Wheat	plastid	53.8	54.44
EES11671	Sorghum	plastid	53.18	54.0
Zm00001d026647_P005	Maize	nucleus	52.91	44.17
Solyc07g018350.2.1	Tomato	nucleus	17.99	24.78
Solyc06g069230.2.1	Tomato	cytosol	20.14	23.86
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	10.47	22.9
Solyc01g079520.2.1	Tomato	plastid	25.25	21.49
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	15.04	21.21
Solyc10g018540.1.1	Tomato	cytosol	5.19	16.91
Solyc09g090870.2.1	Tomato	mitochondrion	14.23	13.98
Solyc03g080010.2.1	Tomato	plastid	9.58	12.95
Solyc02g078390.2.1	Tomato	plastid	10.03	12.35
Solyc09g090890.1.1	Tomato	extracellular	1.34	10.42
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950
GO:GO:0006974	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678
UniProt:K4BF62	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188
PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122
SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF55271	EnsemblPlantsGene:Solyc03g025890.1
EnsemblPlants:Solyc03g025890.1.1	UniParc:UPI0002768E9B	SEG:seg	:	:	:

Description

DNA mismatch repair protein MSH3 [Source:Projected from Arabidopsis thaliana (AT4G25540) UniProtKB/Swiss-Prot;Acc:O65607]

Coordinates

chr3:+:3291786..3312810

Molecular Weight (calculated)

123524.0 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.130

Length

1117 amino acids

Sequence
(BLAST)

0001: MGKPKQQVIS RFFAPKPKNE EDPSTSTTPC TPPPKIVATV SFSPAKRLRT SQLISPQNKL SSSYDDYPTK PTKTPKLSTH VDNPSTPLPN PTLHQKFLDK
0101: LLEPSYHLLE PSKCHEIANP KYTPLEQQVV ELKTKYPDVL LMIEVGYRYR FFGQDAENAA RVLGIYAHMD HNFLTASVPT FRLNIHVRRL VSAGYKVGVV
0201: KQTETAAIKA HGSNKLGPFG RGLSALYTKA TLEASEDVGG GDEGFGSCNN YLVCVVEKVI DLEGCGNDVK LGVVGVEVST GDVVYGEFND NFMRAGLEAM
0301: ILNLLPAELL VGRPISKQTE KLLLAYAGPA SNVRVEDVSS DRFSDGGALA EVMSLYEGMQ ETNLLDVQEK EEAEMKMPKC NQIAIQGIMA MPHLAVQALG
0401: LIVSHLKQFG LERVLCLGAS FRPFSSNMEM TLSANALQQL EVLMNNFDGS ESGSLFHCMN QTLTLFGSRL LRHWVTHPLR DRNMIGARLD AVSEIAESMQ
0501: THRTSHTSVL EMEGADVTSS QPEIHHIIVS VLSTIGRPPD IQRGLTRIFH RKATAAEFIA VIQAILIAAK QLQRLFITED RSTNLQRETL HSVLLRKLIS
0601: IASSSTVING AAKLLSALNK EAADRQDLHN LFIISDGKFP EVAEGTRRVE LANEKLDSLI VMHRKQLHIH KLEYTSVAGI THLIELPLNT KVPRDWVKVN
0701: STKKAIRYHS PEVLVALDEL ALANEQLTVV CQAAWSNFLT GFGGYFAEFQ AVVQALASLD CLNSLAILSR NKNYVRPLFV EDDEAVQIHI CSGRHPVLEA
0801: VLQDNFVPND TDLHAEREYC QIVTGPNMGG KSCYIRQVAL IALMAQVGSF VPAISAKLHV LDGIYTRMGA SDSIQQGRST FLEELSEASD ILRKCSANSL
0901: VILDELGRGT STHDGVAIAY ATLQYLLEHK KCMVLFVTHY PEIVSIKNKF PGSVGPYHVS YLTSQRDVNG DFKSNEKMDH INGEDITYLY KLAPGVSGRS
1001: FGFKVAQLAQ LPVTCIQQAI VIAAKLEAAV CNYTEQQFRR SCSLSHRQDG CKNEPTEDVL ESDSLSAGIV EGLDDISELY RELFMNLNYA YLEEHGNDRR
1101: LQFLMQARSL AAQLISR

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.