CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019156.1-P	Field mustard	plastid	97.21	96.4
CDX92716	Canola	plastid	96.09	94.6
AT4G25540.1	Thale cress	nucleus, plastid	84.74	84.27
VIT_16s0100g01310.t01	Wine grape	plastid	64.93	62.83
KRH35336	Soybean	cytosol	24.28	61.41
KRG91481	Soybean	plastid	61.12	61.4
Solyc03g025890.1.1	Tomato	nucleus	61.02	58.73
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	25.12	57.45
VIT_00s0388g00030.t01	Wine grape	plastid	25.49	55.92
TraesCS2D01G352400.1	Wheat	cytosol	48.93	54.0
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	52.56	53.66
HORVU2Hr1G085940.21	Barley	cytosol	43.16	53.15
EES11671	Sorghum	plastid	54.05	52.82
TraesCS2B01G372300.1	Wheat	plastid	53.58	52.17
CDY40145	Canola	cytosol, extracellular, plastid	3.63	46.43
Zm00001d026647_P005	Maize	nucleus	53.3	42.83
CDX82340	Canola	nucleus	19.81	22.73
CDY52899	Canola	nucleus	19.72	22.63
CDX76574	Canola	cytosol, peroxisome, plasma membrane	15.63	21.21
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	15.35	20.99
CDY65220	Canola	cytosol	15.53	20.82
CDX90956	Canola	plastid	25.4	20.42
CDX91808	Canola	mitochondrion, nucleus, plastid	25.02	20.36
CDY19637	Canola	cytosol	15.63	19.74
CDY25338	Canola	plastid	19.81	19.36
CDY47171	Canola	mitochondrion, nucleus	19.63	19.3
CDY41773	Canola	plastid	10.88	14.61
CDY28796	Canola	plastid	10.7	14.34
CDX95680	Canola	cytosol	1.77	14.29
CDY49227	Canola	mitochondrion	14.14	13.52
CDX77432	Canola	mitochondrion	14.05	13.46
CDX86902	Canola	cytosol	1.4	12.1
CDX91525	Canola	plastid	9.77	11.84
CDY59535	Canola	cytosol	1.49	11.51
CDX76575	Canola	cytosol	1.49	11.51
CDY16386	Canola	plastid	9.49	8.64
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	GO:A0A078ILI4
UniProt:A0A078ILI4	EnsemblPlants:CDY50199	ProteinID:CDY50199	ProteinID:CDY50199.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00096132001
InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF122	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF55271
UniParc:UPI0004EEF139	SEG:seg	:	:	:	:

Description

BnaA03g47490DBnaA03g47490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILI4]

Coordinates

chrLK032888:+:80516..85630

Molecular Weight (calculated)

118324.0 Da

IEP (calculated)

7.168

GRAVY (calculated)

-0.171

Length

1075 amino acids

Sequence
(BLAST)

0001: MGKQKQQVIS RFFAPKPKPS PPPNQESSTP PPKISATVSF SPSKRKLLSD HLAAASPKKP KPSQNPTPKP DPNLHRSFLQ RFLEPPPEEE SLPVTTSIKY
0101: TPLEQQVVEL KRKHPDVILM VEVGYRYRFF GEDAEIAARV LGIYAHMDHS FMTASVPTFR LNVHVRRLVN AGYKVGVVKQ TETAAIKSHG ANRSGPFFRG
0201: LSGLYTKATL EAAEDISGGC VGEEGFGGQS NFLVCVVDER VDRESNKGCG LEASFDVRVG VVGVEISTGE VVHGEFNDNF MRSGLEAVVL SLSPAELLLG
0301: QPLSQQTEKF LLGYAGPTSN VRVERAALDR FRNGSAVDEI VSIYEDLSAR NIEDDKENKV EAAEEKISRL TVHTIMNMPH LTVKALALTL RHFKQFGFER
0401: ILFEGASIRS LSSTTEMTLS ANTLQQLEVI RNNSDGSESG SLFHNMNQTL TVYGSRLLRH WVTHPLCDRN LISARLDAVS EIVACMGSPS SSQASDELDE
0501: QSSERKIVPS EFYHVLSSVL TALSRSPDIQ RGITRIFHRT AKATEFIAVI EAILLAGKQL QRLGIKQYCE TRSMQSATVR SSLLRKLISV VSSPAVVDNA
0601: AKLLSALNKE GAARGDLLDI LITSSNQFPE LAEARQAVLA VREKLDSLIV SYRKKLANRN LDFLDVSGIT HLIEVPVDAK VPINWVKVNS TKKTIRYHPP
0701: EIVAGLDELA LATEHLAIVN RASWDSFLKS FAGYYIDFQA AIQALAALDC LHSFATLSRN KNYMCPLFVD DSEPVEINIQ SGRHPVLETI LQDNFVPNDT
0801: SLHAEGEYCQ IITGPNMGGK SCYIRQVALI SIMAQVGSFV PASFAKLHVL DGVFTRMGAT DSIQHGRSTF LEELSEASHI IRTCSSRSLV IIDELGRGTS
0901: THDGVAIAYA TLHHLLVEKR CLVLFVTHYP EIAEISNSFP VSAGTYHVSY LTSQKDNGGS DHDNVTYLYK LVRGLCSRSF GFKVAQLAQI PPSCIDRAIT
1001: MAANLEAEVR ARERKTSPGK PKAHAEPPES RTEESMSVLG DLFADLRCAL SEDDPSKSFK LLKDAWKIAE DLVAR

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.