CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76575	Canola	cytosol	17.43	98.56
CDY59535	Canola	cytosol	17.43	98.56
CDX76574	Canola	cytosol, peroxisome, plasma membrane	95.55	94.82
Bra021052.1-P	Field mustard	cytosol	95.17	94.44
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	91.35	90.66
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	41.98	78.01
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	77.74	77.15
Os07t0486000-02	Rice	cytosol	73.28	72.18
TraesCS2B01G198300.1	Wheat	cytosol	73.16	71.25
TraesCS2A01G171900.1	Wheat	cytosol	72.77	70.62
EER99382	Sorghum	cytosol	71.63	70.11
HORVU2Hr1G031870.17	Barley	cytosol	73.03	69.66
Zm00001d006382_P004	Maize	cytosol	67.05	62.37
CDY40145	Canola	cytosol, extracellular, plastid	4.07	38.1
CDX82340	Canola	nucleus	22.39	18.78
CDY52899	Canola	nucleus	22.39	18.78
CDY65220	Canola	cytosol	18.32	17.96
CDY19637	Canola	cytosol	17.81	16.45
CDY50199	Canola	plastid	20.99	15.35
CDX86902	Canola	cytosol	2.42	15.32
CDY47171	Canola	mitochondrion, nucleus	20.87	15.0
CDY25338	Canola	plastid	20.99	15.0
CDX92716	Canola	plastid	20.48	14.74
CDX91808	Canola	mitochondrion, nucleus, plastid	21.63	12.87
CDX95680	Canola	cytosol	2.16	12.78
CDX90956	Canola	plastid	20.87	12.27
CDY41773	Canola	plastid	11.7	11.49
CDY28796	Canola	plastid	11.7	11.47
CDX91525	Canola	plastid	11.07	9.81
CDX77432	Canola	mitochondrion	13.23	9.27
CDY49227	Canola	mitochondrion	13.23	9.25
CDY16386	Canola	plastid	11.07	7.37

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.30.420.110	Gene3D:3.40.50.300	GO:A0A078J7U7	UniProt:A0A078J7U7
EnsemblPlants:CDY59530	ProteinID:CDY59530	ProteinID:CDY59530.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00026208001	InterPro:IPR036678
InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813
PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
UniParc:UPI0004EEE500	SEG:seg	:	:	:	:

Description

BnaCnng35120DBnaCnng35120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7U7]

Coordinates

chrLK033774:+:17894..23308

Molecular Weight (calculated)

88726.5 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.074

Length

786 amino acids

Sequence
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPC VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFSHMNIDAT SVENLEIIDP FHNSLLGTNN KKRSLFQMFK
201: TTKTVGGTRL LRANLLQPLK DIKTINTRLD CLDEMMSNEE LFYGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVLDLFAR FGNYVYDRLL ALVALFPMQA
301: LKDAKCFLLA NIYKTVCEND RYASIRKRVG EVIDDDVLHA RVPFVARSQQ CFALKAGIDG FLDMARRTFC DTSEVIHNLA SKYREEFNLP NLKLPFNNRQ
401: GFFFRISQKE VQEKLPSKFT QVVKHGKNIH CSSLELASLN VRNKSAAGEC FVRTEICLEA LMDAIREDVS ALTLLAEVLC LLDMIVNSFA HSISTKPVDR
501: YSRPELTDSG PLAIDAGRHP ILESIHNDFV PNSIFMSEAS NMLVVMGPNM SGKSTYLQQV CLVVILAQIG CYVPARFATM RVVDRIFTRM GTMDNLESNS
601: STFMTEMRET AFIMQNVSNR YLIVMDELGR ATSSSDGLAM AWSCCEHLLS LKAYTVFATH MDSLAELATI YPNVKVLHFH VDIRDNRLDF KFQLRDGTLH
701: VPHYGLLLAE VAGLPNTVIE TARTITSRIT DKEMKRIELN CEKHHEMHQI YRVAQKLICL RYSKQNEDSI RQALQNLKDS FIEGRL

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.