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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021052.1-P Field mustard cytosol 93.43 93.43
CDX76574 Canola cytosol, peroxisome, plasma membrane 93.43 93.43
CDY59530 Canola endoplasmic reticulum, nucleus, peroxisome 90.66 91.35
VIT_00s0229g00200.t01 Wine grape cytosol 15.53 85.42
Solyc08g007330.2.1 Tomato cytosol, peroxisome, plastid 79.04 79.04
KRH28123 Soybean cytosol 77.65 77.46
PGSC0003DMT400032552 Potato cytosol, peroxisome, plastid 41.16 77.07
Os07t0486000-02 Rice cytosol 74.87 74.31
TraesCS2B01G198300.1 Wheat cytosol 74.75 73.36
EER99382 Sorghum cytosol 73.74 72.73
TraesCS2A01G171900.1 Wheat cytosol 74.37 72.72
GSMUA_Achr8P08030_001 Banana cytosol 27.27 72.48
HORVU2Hr1G031870.17 Barley cytosol 74.49 71.6
Zm00001d006382_P004 Maize cytosol 69.19 64.85
AT3G18524.1 Thale cress nucleus 21.59 18.25
AT3G20475.1 Thale cress cytosol 18.06 17.72
AT3G24495.1 Thale cress mitochondrion 21.09 15.06
AT4G25540.1 Thale cress nucleus, plastid 19.7 14.43
AT4G02070.1 Thale cress plastid 22.1 13.22
AT5G54090.1 Thale cress plastid 10.98 10.93
AT3G24320.1 Thale cress mitochondrion 14.14 10.02
AT1G65070.2 Thale cress plastid 10.73 9.7
KRG88723 Soybean cytosol, extracellular, mitochondrion, nucleus 0.13 0.83
Protein Annotations
Gene3D:1.10.1420.10MapMan:13.3.6.5.1.2.1Gene3D:3.30.420.110Gene3D:3.40.50.300EntrezGene:827450ProteinID:AEE83882.1
ArrayExpress:AT4G17380EnsemblPlantsGene:AT4G17380RefSeq:AT4G17380TAIR:AT4G17380RefSeq:AT4G17380-TAIR-GEnsemblPlants:AT4G17380.1
TAIR:AT4G17380.1EMBL:AY646927Unigene:At.71316ProteinID:CAB10519.1ProteinID:CAB78741.1InterPro:DNA_mismatch_repair_Msh2
InterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_clampInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfUniProt:F4JP48GO:GO:0000003
GO:GO:0000166GO:GO:0000794GO:GO:0000795GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006298GO:GO:0006950GO:GO:0007049
GO:GO:0007129GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009506GO:GO:0009987
GO:GO:0010777GO:GO:0016043GO:GO:0016787GO:GO:0030983GO:GO:0043073GO:GO:0045143
GO:GO:0051026GO:GO:0051321InterPro:IPR036678Symbol:MSH4InterPro:MutS_con_dom_sfRefSeq:NP_193469.2
InterPro:P-loop_NTPasePFAM:PF00488PFAM:PF05190PFAM:PF05192PIRSF:PIRSF005813PO:PO:0006204
PO:PO:0007006PO:PO:0007611PO:PO:0009046PANTHER:PTHR11361PANTHER:PTHR11361:SF21SMART:SM00533
SMART:SM00534SUPFAM:SSF48334SUPFAM:SSF52540UniParc:UPI00005DC248SEG:seg:
Description
MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
Coordinates
chr4:+:9708684..9714135
Molecular Weight (calculated)
89019.7 Da
IEP (calculated)
7.745
GRAVY (calculated)
-0.073
Length
792 amino acids
Sequence
(BLAST)
001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.