CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
plasma membrane 1
nucleus 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33415	Soybean	cytosol, extracellular, plastid	79.34	78.05
KRG88725	Soybean	nucleus	80.99	34.39
KRG90178	Soybean	mitochondrion	71.07	19.2
KRH33548	Soybean	nucleus	69.42	7.43
KRH39265	Soybean	mitochondrion	15.7	1.76
KRH48416	Soybean	cytosol	14.88	1.59
KRG91481	Soybean	plastid	12.4	1.4
KRG96523	Soybean	plastid	14.05	1.34
Bra035922.1-P	Field mustard	cytosol	1.65	1.18
KRH50031	Soybean	plastid	7.44	0.98
KRH03809	Soybean	nucleus	7.44	0.96
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	4.13	0.92
KRH72584	Soybean	plastid	4.13	0.63
KRH20465	Soybean	cytosol	0.83	0.49
KRH35336	Soybean	cytosol	1.65	0.47
EER99382	Sorghum	cytosol	2.48	0.37
TraesCS2B01G198300.1	Wheat	cytosol	2.48	0.37
TraesCS2A01G171900.1	Wheat	cytosol	2.48	0.37
HORVU2Hr1G031870.17	Barley	cytosol	2.48	0.36
Zm00001d006382_P004	Maize	cytosol	2.48	0.36
Os07t0486000-02	Rice	cytosol	1.65	0.25
KRH73763	Soybean	cytosol	1.65	0.25
KRH14375	Soybean	cytosol	1.65	0.25
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	0.83	0.24
KRG90177	Soybean	cytosol	0.83	0.15
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	0.83	0.13
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	0.83	0.13
KRH28123	Soybean	cytosol	0.83	0.13
KRH16964	Soybean	cytosol, nucleus	0.0	0.0
GSMUA_Achr8P08030_001	Banana	cytosol	0.0	0.0
CDY59535	Canola	cytosol	0.0	0.0
CDX76575	Canola	cytosol	0.0	0.0
Bra035923.1-P	Field mustard	cytosol	0.0	0.0
Bra035921.1-P	Field mustard	cytosol	0.0	0.0
VIT_00s0229g00200.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	InterPro:DNA_mismatch_repair_MutS_N	EnsemblPlantsGene:GLYMA_U031800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0030983	InterPro:IPR016151	UniProt:K7LIX7	EnsemblPlants:KRG88723	ProteinID:KRG88723
ProteinID:KRG88723.1	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SUPFAM:SSF55271	TMHMM:TMhelix	UniParc:UPI000296BD7A

Description

hypothetical protein

Coordinates

chrscaffold_31:-:67991..69204

Molecular Weight (calculated)

13760.9 Da

IEP (calculated)

6.396

GRAVY (calculated)

0.244

Length

121 amino acids

Sequence
(BLAST)

001: MLQMCRKLST VQLTERLDYS NLPGLNPNMK NGSLKEGTLN WEMLQFKPKF PRQVLLCRVG EFYEAWGINV CILVEYEGLN PFGGLQSDSI LRAGCPVVVF
101: LFLSANFYID AAICFGYFLF S

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.