Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14375 | Soybean | cytosol | 95.56 | 95.32 |
| VIT_19s0090g00670.t01 | Wine grape | cytosol | 77.16 | 78.81 |
| AT3G20475.1 | Thale cress | cytosol | 71.48 | 71.75 |
| CDY65220 | Canola | cytosol | 70.25 | 70.95 |
| Solyc10g018530.1.1 | Tomato | endoplasmic reticulum, vacuole | 43.46 | 68.88 |
| GSMUA_Achr6P29480_001 | Banana | cytosol | 31.23 | 68.19 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 52.1 | 66.77 |
| OQU78247 | Sorghum | cytosol | 64.2 | 66.24 |
| TraesCS1D01G316200.1 | Wheat | cytosol | 66.3 | 65.73 |
| CDY19637 | Canola | cytosol | 68.77 | 65.45 |
| Bra035777.1-P | Field mustard | cytosol | 68.15 | 65.33 |
| TraesCS1A01G315900.1 | Wheat | cytosol | 65.8 | 65.16 |
| Os05t0498300-01 | Rice | cytosol | 64.44 | 64.52 |
| Solyc10g018540.1.1 | Tomato | cytosol | 27.04 | 63.85 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 41.48 | 63.4 |
| Zm00001d000329_P002 | Maize | cytosol | 33.83 | 59.96 |
| GSMUA_Achr6P29470_001 | Banana | mitochondrion | 32.96 | 59.6 |
| KRH35336 | Soybean | cytosol | 13.58 | 25.88 |
| KRH28123 | Soybean | cytosol | 17.78 | 18.14 |
| KRH03809 | Soybean | nucleus | 19.75 | 16.99 |
| KRG91481 | Soybean | plastid | 20.12 | 15.23 |
| KRG90177 | Soybean | cytosol | 10.86 | 13.06 |
| KRH39265 | Soybean | mitochondrion | 16.91 | 12.7 |
| KRG96523 | Soybean | plastid | 19.75 | 12.57 |
| KRH48416 | Soybean | cytosol | 16.91 | 12.13 |
| KRH16965 | Soybean | cytosol, mitochondrion, nucleus, plastid | 7.65 | 11.46 |
| KRH72584 | Soybean | plastid | 10.74 | 11.01 |
| KRH33548 | Soybean | nucleus | 14.81 | 10.62 |
| KRH50031 | Soybean | plastid | 11.23 | 9.96 |
| KRH20465 | Soybean | cytosol | 2.47 | 9.85 |
| KRG90178 | Soybean | mitochondrion | 2.84 | 5.13 |
| KRH16964 | Soybean | cytosol, nucleus | 0.62 | 3.01 |
| KRG88723 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 0.25 | 1.65 |
| KRH33415 | Soybean | cytosol, extracellular, plastid | 0.25 | 1.63 |
| KRG88725 | Soybean | nucleus | 0.25 | 0.7 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.2 | Gene3D:3.40.50.300 | UniProt:A0A0R0L9U5 | EMBL:ACUP02001288 | InterPro:DNA_mismatch_repair_Msh2 |
| InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | EnsemblPlantsGene:GLYMA_02G292200 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0030983 | EnsemblPlants:KRH73763 | ProteinID:KRH73763 | ProteinID:KRH73763.1 | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF005813 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF20 |
| SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | UniParc:UPI0006EE1A3D | : |
Description
hypothetical protein
Coordinates
chr2:-:47125531..47139234
Molecular Weight (calculated)
91613.3 Da
IEP (calculated)
4.780
GRAVY (calculated)
-0.041
Length
810 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDMDEIDAV PQVYMACILN GNRIGVSYYD STLRQLYVLE IWDDGDKGFP VIDLVKYQAN PLVIYTSTKS EESFLSALQQ SDGVAESPTV KLVKSSIFSY
101: EQAWHSLPGV AGMDDGLNVK ERIYYLSSMM DLGSEVQVRA SGGLLAILEN ERIVDTLEQK ESGNTSITID SLAEISLNNF LKLDTTAHEA LQIFQIDKHP
201: SHMGIGRAKE GFSVFGMMNK CVTPMGRRLL RNWFLRPILD LEVLNYRLNS ISFFLCSEEL VASLRETLKS VKDIPHLLNK FDSPSSICTS SDWTSLLKSI
301: CALLHVNEIF EVGISEGLRE ELKYLNLDIV EKASSYITAE LGYVYELVIG VIDVNRTKEK GYATVVKEGF CDELDELRQI YEELPEFLEE VSSLELAQLP
401: VLCKDKRIPC IVYIQQIGYL MCIFEEKPEE TTLEQLVDWE YTFCDTDGET KRYFYRTPKT RELDSLLGDI HHKILDMERA IARDLFSRIL LFRTHLIKVA
501: TFAAELDCFL SMALVARQHN YVRPSLTEEN LLDIKNGRHV LQEMTVDTFI PNDTRILHDG RINIITGPNF SGKSIYIKQV AIIVFLSHIG SFVPADSATV
601: GLTDRIFCAT GSRLMTAEQS TFMIDLHQIG MMLRHATSRS LCLVDEFGKG TLTEDGIGLL AGTINHFVTT DEPPKVFVCT HLMDLLHGHS LTKSEQIKFY
701: TMSMLRPDEN STHIEDIVFL YRLVPGRAHH SYGLHCALLA GVPEEIIKRA AAVLDAISNN NHVERLCNEN VSAQDRQYKD AMEKLLEFDI DKGDLKLFFE
801: DVFSLVLNAS
101: EQAWHSLPGV AGMDDGLNVK ERIYYLSSMM DLGSEVQVRA SGGLLAILEN ERIVDTLEQK ESGNTSITID SLAEISLNNF LKLDTTAHEA LQIFQIDKHP
201: SHMGIGRAKE GFSVFGMMNK CVTPMGRRLL RNWFLRPILD LEVLNYRLNS ISFFLCSEEL VASLRETLKS VKDIPHLLNK FDSPSSICTS SDWTSLLKSI
301: CALLHVNEIF EVGISEGLRE ELKYLNLDIV EKASSYITAE LGYVYELVIG VIDVNRTKEK GYATVVKEGF CDELDELRQI YEELPEFLEE VSSLELAQLP
401: VLCKDKRIPC IVYIQQIGYL MCIFEEKPEE TTLEQLVDWE YTFCDTDGET KRYFYRTPKT RELDSLLGDI HHKILDMERA IARDLFSRIL LFRTHLIKVA
501: TFAAELDCFL SMALVARQHN YVRPSLTEEN LLDIKNGRHV LQEMTVDTFI PNDTRILHDG RINIITGPNF SGKSIYIKQV AIIVFLSHIG SFVPADSATV
601: GLTDRIFCAT GSRLMTAEQS TFMIDLHQIG MMLRHATSRS LCLVDEFGKG TLTEDGIGLL AGTINHFVTT DEPPKVFVCT HLMDLLHGHS LTKSEQIKFY
701: TMSMLRPDEN STHIEDIVFL YRLVPGRAHH SYGLHCALLA GVPEEIIKRA AAVLDAISNN NHVERLCNEN VSAQDRQYKD AMEKLLEFDI DKGDLKLFFE
801: DVFSLVLNAS
001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
Arabidopsis Description
MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.