CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50031	Soybean	plastid	85.71	19.04
PGSC0003DMT400057653	Potato	plastid	56.65	16.62
Solyc02g078390.2.1	Tomato	plastid	57.14	12.79
GSMUA_Achr7P04320_001	Banana	plastid	54.68	12.2
AT1G65070.2	Thale cress	plastid	51.23	11.87
Bra022497.1-P	Field mustard	plastid	48.28	11.06
CDX91525	Canola	plastid	48.28	11.05
CDY16386	Canola	plastid	48.28	8.3
KRH16964	Soybean	cytosol, nucleus	4.43	5.42
KRH72584	Soybean	plastid	19.7	5.06
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	11.33	4.25
KRH35336	Soybean	cytosol	8.37	4.0
KRG90177	Soybean	cytosol	12.32	3.71
KRH73763	Soybean	cytosol	9.85	2.47
KRH14375	Soybean	cytosol	9.85	2.46
KRH33415	Soybean	cytosol, extracellular, plastid	1.48	2.44
KRH39265	Soybean	mitochondrion	11.33	2.13
KRH48416	Soybean	cytosol	11.33	2.04
KRH33548	Soybean	nucleus	10.34	1.86
KRH28123	Soybean	cytosol	6.9	1.76
KRG91481	Soybean	plastid	8.87	1.68
KRH03809	Soybean	nucleus	7.39	1.59
KRG96523	Soybean	plastid	9.85	1.57
KRG88725	Soybean	nucleus	1.48	1.05
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.49	0.83
KRG90178	Soybean	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	EMBL:ACUP02008265	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C	EnsemblPlantsGene:GLYMA_13G180600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887
GO:GO:0030983	GO:GO:0045910	GO:GO:0090305	UniProt:K7M0D6	EnsemblPlants:KRH20465	ProteinID:KRH20465
ProteinID:KRH20465.1	InterPro:MutS2	InterPro:P-loop_NTPase	PANTHER:PTHR11361	PANTHER:PTHR11361:SF14	SMART:SM00534
SUPFAM:SSF52540	UniParc:UPI000296D8FD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:29391096..29392248

Molecular Weight (calculated)

23531.3 Da

IEP (calculated)

5.393

GRAVY (calculated)

-0.514

Length

203 amino acids

Sequence
(BLAST)

001: MKLLVELILQ KVLQYLKDRA NLAVVTTHYA DLSSMKETDT RFDNATMEFS LETLQPTYRI LWGCTGDSNA LSIAGSIGFD RNIIDRAQKW VEKFQSEQQQ
101: ERRGMLYRSL QEERNRLKAQ VEKAASIHAE IMSVHNEIQG EAEDLDQREM ELMAKETQQV QHELEHAKSQ METVIQKFEK RLRISGINSI LLLENLNLQL
201: PPL

Best Arabidopsis Sequence Match ( AT1G65070.4 )
(BLAST)

001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRK I

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.