CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73763	Soybean	cytosol	95.32	95.56
VIT_19s0090g00670.t01	Wine grape	cytosol	77.46	79.32
AT3G20475.1	Thale cress	cytosol	72.04	72.49
CDY65220	Canola	cytosol	70.81	71.7
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	43.35	68.88
GSMUA_Achr6P29480_001	Banana	cytosol	31.28	68.46
HORVU1Hr1G066830.9	Barley	cytosol	51.72	66.46
CDY19637	Canola	cytosol	69.33	66.16
Bra035777.1-P	Field mustard	cytosol	68.72	66.04
OQU78247	Sorghum	cytosol	63.67	65.86
TraesCS1D01G316200.1	Wheat	cytosol	65.89	65.48
TraesCS1A01G315900.1	Wheat	cytosol	65.39	64.91
Solyc10g018540.1.1	Tomato	cytosol	27.34	64.72
Os05t0498300-01	Rice	cytosol	63.79	64.03
TraesCS1B01G328200.1	Wheat	cytosol	41.13	63.02
GSMUA_Achr6P29470_001	Banana	mitochondrion	33.37	60.49
Zm00001d000329_P002	Maize	cytosol	33.99	60.39
KRH35336	Soybean	cytosol	13.3	25.41
KRH28123	Soybean	cytosol	17.86	18.26
KRH03809	Soybean	nucleus	19.7	16.99
KRG91481	Soybean	plastid	19.7	14.95
KRG90177	Soybean	cytosol	11.08	13.35
KRH39265	Soybean	mitochondrion	17.0	12.79
KRG96523	Soybean	plastid	19.58	12.49
KRH48416	Soybean	cytosol	17.0	12.22
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	7.76	11.65
KRH72584	Soybean	plastid	10.71	11.01
KRH33548	Soybean	nucleus	15.02	10.8
KRH50031	Soybean	plastid	11.45	10.18
KRH20465	Soybean	cytosol	2.46	9.85
KRG90178	Soybean	mitochondrion	2.83	5.13
KRH16964	Soybean	cytosol, nucleus	0.62	3.01
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.25	1.65
KRH33415	Soybean	cytosol, extracellular, plastid	0.25	1.63
KRG88725	Soybean	nucleus	0.25	0.7

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100794332	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	EMBL:ACUP02008500	InterPro:DNA_mismatch_repair_Msh2
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	EnsemblPlantsGene:GLYMA_14G022400	GO:GO:0000003
GO:GO:0000166	GO:GO:0000795	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983
GO:GO:0051026	UniProt:K7M4I0	EnsemblPlants:KRH14375	ProteinID:KRH14375	ProteinID:KRH14375.1	ProteinID:KRH14376.1
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
UniParc:UPI000296F926	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:1578265..1594980

Molecular Weight (calculated)

91925.1 Da

IEP (calculated)

5.045

GRAVY (calculated)

-0.029

Length

812 amino acids

Sequence
(BLAST)

001: MEDMDEIDAV PQVYMACILN GNRIGVSYYD STLRQLYVLE VWDDGDKGFP VIDLVKYQAN PLVIYTSTKS EESFLSALQQ RDGAAESPIV KLVKSSIFSY
101: EQAWHRLVYL RVAGMDDGLN VKERIYYLSS MMNMGSEVQV RASGGLLAIL ENERIVDTLE QKESGNTSIT IDSLAEISLN NFLKLDTAAH EALQIFQIDK
201: HPSHMGIGRA KEGFSVFGMM NKCVTPMGRR LLRNWFLRPI LDLEVLNYRL NSISFFLCSE ELVTSLRETL KSVKDIPLLL KKFDSPSSIC TSFDWTALLK
301: SICAMLHVNK IFEVGISEGL REELKYLNLD IVEKASSHIT AELGYVYELV IGVIDVNRTK EKGYATVVKE GFCDELDELR QIYEELPEFL EEVSSLELAQ
401: LPVLCKDKRI PCIVYIQQIG YLMCIFGEKP EETTLEQLVD WEYTFCDTDG ETKKYFYRTP KTRELDSLLG DIHHKILDME RAITRDLFSR ILLFQTHLIK
501: VATFAAELDC FLSMALVARQ NNYVRPSLTE ENLLDIKNGR HVLQEMTVDT FIPNDTKILH DGRINIITGP NFSGKSIYLK QVAIIVFLSH IGSFVPADAA
601: TVGLTDRIFC ATGSRLMTAE QSTFMIDLHQ IGMMLRHATS RSLCLVDEFG KGTLTEDGIG LLAGTINHFV TTDEPPKVFV CTHLMDLLHG HSLTKSEQIK
701: FYTMSILRPD GNSTHIEDIV FLYRLVPGHA HHSYGLHCAL LAGVPEEIIK RATAVLDTVS NNKHVERLSN ENISAQDRQY KDAMEKLLEF DIDKGDLKIF
801: FEDVFSLVLN AS

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.