Factsheet for TraesCS1B01G328200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000329_P002	Maize	cytosol	70.94	82.28
HORVU1Hr1G066830.9	Barley	cytosol	93.4	78.32
GSMUA_Achr6P29480_001	Banana	cytosol	54.72	78.17
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	64.15	66.54
TraesCS1D01G316200.1	Wheat	cytosol	98.3	63.77
TraesCS1A01G315900.1	Wheat	cytosol	97.92	63.45
Os05t0498300-01	Rice	cytosol	87.74	57.48
OQU78247	Sorghum	cytosol	84.72	57.2
VIT_19s0090g00670.t01	Wine grape	cytosol	66.04	44.14
AT3G20475.1	Thale cress	cytosol	64.15	42.13
KRH73763	Soybean	cytosol	63.4	41.48
CDY65220	Canola	cytosol	62.64	41.4
KRH14375	Soybean	cytosol	63.02	41.13
CDY19637	Canola	cytosol	63.4	39.48
Bra035777.1-P	Field mustard	cytosol	62.45	39.17
GSMUA_Achr6P29470_001	Banana	mitochondrion	13.96	16.52
TraesCS2B01G198300.1	Wheat	cytosol	18.3	12.02
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	23.4	11.78
TraesCS2B01G372300.1	Wheat	plastid	23.4	11.23
TraesCS1B01G149700.3	Wheat	nucleus	19.62	10.79
TraesCS1B01G200700.1	Wheat	plastid	14.72	9.42
TraesCS2B01G379900.1	Wheat	mitochondrion	16.04	7.54
TraesCS3B01G136600.1	Wheat	mitochondrion	17.36	7.53
TraesCS2B01G595200.1	Wheat	endoplasmic reticulum, plastid, vacuole	12.83	7.41
TraesCS3B01G287700.1	Wheat	cytosol	8.87	5.32
Solyc10g018540.1.1	Tomato	cytosol	2.64	4.08

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0000712	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0030983	GO:GO:0045143	GO:GO:0051026	InterPro:P-loop_NTPase	PFAM:PF00488
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1B01G328200	EnsemblPlants:TraesCS1B01G328200.1	TIGR:cd03281	SEG:seg

Description

No Description!

Coordinates

chr1B:+:554985582..554994834

Molecular Weight (calculated)

59641.4 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.085

Length

530 amino acids

Sequence
(BLAST)

001: MDDDEEEQLE KEEEVAETGI DSQCICSLLH INKIFEVGIS EHLANKLQHM SIDLVEKANS SITAELDYVS NLVIGVIDVQ RSKEKGYETL VKENLCDELD
101: ELRMVYEELP DFLEQVSANE NASFPFSLEC RKAPLIVYVH QIGYLMCFFD EKISEALLIG LQDFEFAFSE DGEERRFYYH TQKTRELDNL LGDIYHKILD
201: MERAIIRDLV CRVLQFLPQL TKAVNFAAEL DCILSLAIVA RQNNYVRPIL TEDSILEIQN GRHALQEMTV DTFVPNDTKI RSAGRINIIT GPNYSGKSIY
301: IKQVALVVFL AHIGSFVPAD SAVVGLTDRI FCAMGSKSMT TEQSTFMIDL HQVGTMLRHA TSSSLCLLDE FGKGTLTEDG IGLLGGTISH FANYDYPPKV
401: LLSTHLTEIF TENYLPQSEH IKCCTMSVLN PDGQTSNEDI IFLYRLVPGQ ALLSFGLHCA QLAGVPGEVI QRAASVLEDI HSKRPVRRMI DDNLAAKDKQ
501: YQDAMAKLLA FDPRKGDLNH FFEDVFPPEA

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.