CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G20475.1	Thale cress	cytosol	92.89	92.32
CDY19637	Canola	cytosol	94.76	89.31
VIT_19s0090g00670.t01	Wine grape	cytosol	75.06	75.91
KRH14375	Soybean	cytosol	71.7	70.81
KRH73763	Soybean	cytosol	70.95	70.25
GSMUA_Achr6P29480_001	Banana	cytosol	31.92	69.0
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	43.52	68.3
HORVU1Hr1G066830.9	Barley	cytosol	51.87	65.82
OQU78247	Sorghum	cytosol	63.72	65.1
Os05t0498300-01	Rice	cytosol	64.84	64.28
TraesCS1D01G316200.1	Wheat	cytosol	65.21	64.01
Solyc10g018540.1.1	Tomato	cytosol	27.18	63.56
TraesCS1A01G315900.1	Wheat	cytosol	64.71	63.45
TraesCS1B01G328200.1	Wheat	cytosol	41.4	62.64
Zm00001d000329_P002	Maize	cytosol	35.29	61.93
GSMUA_Achr6P29470_001	Banana	mitochondrion	31.17	55.8
CDY40145	Canola	cytosol, extracellular, plastid	3.74	35.71
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	17.96	18.32
CDX76574	Canola	cytosol, peroxisome, plasma membrane	17.96	18.18
CDY52899	Canola	nucleus	20.7	17.72
CDX82340	Canola	nucleus	20.57	17.61
CDY50199	Canola	plastid	20.82	15.53
CDX92716	Canola	plastid	20.95	15.38
CDX91808	Canola	mitochondrion, nucleus, plastid	21.2	12.87
CDX90956	Canola	plastid	21.2	12.71
CDY47171	Canola	mitochondrion, nucleus	16.58	12.17
CDY25338	Canola	plastid	16.21	11.82
CDY41773	Canola	plastid	10.6	10.61
CDY28796	Canola	plastid	10.47	10.47
CDX76575	Canola	cytosol	1.75	10.07
CDY59535	Canola	cytosol	1.75	10.07
CDX77432	Canola	mitochondrion	13.72	9.8
CDX91525	Canola	plastid	10.72	9.7
CDX86902	Canola	cytosol	1.5	9.68
CDY49227	Canola	mitochondrion	13.22	9.43
CDX95680	Canola	cytosol	1.37	8.27
CDY16386	Canola	plastid	10.6	7.2

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	GO:A0A078JFI5	UniProt:A0A078JFI5	EnsemblPlants:CDY65220
ProteinID:CDY65220	ProteinID:CDY65220.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00045421001	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05192
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0004EF41FD	:	:	:

Description

BnaCnng46130DBnaCnng46130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFI5]

Coordinates

chrLK034698:+:10498..17693

Molecular Weight (calculated)

90930.8 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.011

Length

802 amino acids

Sequence
(BLAST)

001: MEETETESQV YMACIQHGRR VGVSYYDCSV RQLHVLEFWE EDCSDFTLIN MVKYQAKPLV IYTSTKSEDS FVSALHKSDG TDEDSTVKLV KSSTFSYEQA
101: WHRLVYLRVT GMDEGLNIKE RVCYLSSMMD VGSEVQVRVS GGLLAILESE RIVDTLEQNE SGTASIAIDS VMEVPLNKFL KLDAAAHEAL QIFQTDKHPS
201: HMGIGRAKEG FSVFGMMNKC ATPMGRRLLR SWFMRPILDL EVLDRRLNAI TFFISSIELM TSLRDTLKSV KDISHLLKKF NSPTSLCTSN DWTAFMKSIG
301: ALLRVNKIFE VGVSESLREH MRRFNLDIIE KAGLCISTEL DHVYELVLGV IDVTRCKEKG YQTLVKDGFC AELDELRQIY EELPEFLQEV SSMEFEHLPH
401: LHKENLPPCI VYIQQIGYLM CIFGEKLEEI ALDRIKEFEF SFSDLDGETH RFFYHTPKTR ELDNVLGDIY HKILDMERAI IRDLLSHTLL FSAHLLKAVN
501: FVAELDCILS LACVAHQNNY VRPVLTMESL LDIRNGRHVL QEMAVDTFIP NDTEINDNGR IHIITGPNYS GKSIYVKQVA LIVFLSHIGS FVPADAATVG
601: LTDRIFCAMG SKFMTAEQST FMIDLHQVGM MLRQATSRSL CLLDEFGKGT LTEDGIGLLG GTISHFASCN EPPRVLVCTH LTELLNESCL PVKIRFYTMS
701: VLRPDTESAN MEEIVFLYRL IPGQTLLSYG LHCALLAGVP EEVVKRAAIV LDIFESNNNV DKLNLDNISF QDQAFKDAVD KFMEFDISKG DIRAFFEDMF
801: TS

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.