CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90956	Canola	plastid	95.46	94.32
AT4G02070.1	Thale cress	plastid	86.98	86.78
VIT_07s0005g01370.t01	Wine grape	plastid	64.04	65.23
KRG96523	Soybean	plastid	61.62	63.94
Solyc01g079520.2.1	Tomato	plastid	61.39	61.81
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	55.34	57.33
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	44.44	56.77
TraesCS5D01G212500.1	Wheat	nucleus	46.93	54.48
Zm00001d020424_P002	Maize	nucleus, plastid	52.91	53.94
KXG35601	Sorghum	mitochondrion, nucleus, plastid	53.14	53.83
TraesCS5A01G206300.1	Wheat	mitochondrion	52.31	52.39
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	26.65	49.51
CDY40145	Canola	cytosol, extracellular, plastid	2.73	42.86
CDY47171	Canola	mitochondrion, nucleus	23.62	28.55
CDY25338	Canola	plastid	23.62	28.36
CDY50199	Canola	plastid	20.36	25.02
CDX92716	Canola	plastid	20.51	24.82
CDX82340	Canola	nucleus	16.05	22.63
CDY52899	Canola	nucleus	15.9	22.41
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	12.87	21.63
CDX76574	Canola	cytosol, peroxisome, plasma membrane	12.94	21.59
CDY65220	Canola	cytosol	12.87	21.2
CDY19637	Canola	cytosol	12.72	19.74
CDY59535	Canola	cytosol	1.89	17.99
CDX76575	Canola	cytosol	1.89	17.99
CDX77432	Canola	mitochondrion	14.31	16.84
CDY49227	Canola	mitochondrion	14.08	16.55
CDY28796	Canola	plastid	9.39	15.46
CDY41773	Canola	plastid	9.16	15.11
CDX86902	Canola	cytosol	1.36	14.52
CDX91525	Canola	plastid	9.46	14.09
CDX95680	Canola	cytosol	1.14	11.28
CDY16386	Canola	plastid	9.54	10.67

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
GO:A0A078DX53	EnsemblPlants:CDX91808	ProteinID:CDX91808	ProteinID:CDX91808.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00153402001	InterPro:IPR002999
InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748	InterPro:Tudor	UniParc:UPI0004EE22C8	SEG:seg

Description

BnaC03g31100D

Coordinates

chrLK031870:-:58909..65979

Molecular Weight (calculated)

147184.0 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.553

Length

1321 amino acids

Sequence
(BLAST)

0001: MAPSRRQISG RSPLVNPQRQ ITSFFGKSAS SSSPSSSPLS NHKTPKSNPN PNSPSPSPLS NTKTPKSKPN PNSPPSPGPT TPSPVHPKLK KPLLVIGQTP
0101: SPPKFTETTY GDEVVGKQVR VYWPLDKKWY EGSVTSYDKG EGKHMVEYED GEEESLDLGK ERIEWVVGEK SGARFKRLRR GAASAFRRVV TDEDEDEEMG
0201: NVEEEKEDKS DGDDSSDEDW GKNVGKEVCE SEEDDVELDA EDDTMDEEEL VEEKDEETPS IADSRKRKKT SEVAKPGGEK KSKTDKETTF KGFKASVVEP
0301: VKQTGEADRV VKGLDDNMLD GDALARFGAR ESEKFRFMGV DRRDAKRRRP TDENYDPRTL YLPPDFVKRL TGGQRQWWEF KSKHMDKVIF FKMGKFYELY
0401: EMDAHVGAKE LDLRYMKGEQ PHCGFPEKNF SVNIEKLVQK GFRVLVVEQT ETPDQLERRR KEKGSKDKVV KREICAVVTR GTLTDGEMVL TNPDASYLMA
0501: LTEGGESLTD EKAEHNFGVC LVDVATKKII LGQFKDDQDC SALSCVLSEI RPVEIIKPAN MLSSATERTI VRYTRNPLVN NLVPLSEFWD AEKTIHEVGT
0601: FYKGIRCEPS SAYSGEEKIL GDPSLNESGS SFLPKMLSEL ASGDKNGSLA LSALGGAIYY LRQAFLDESL LRYAKFESLP YSDFSNFTEK QHMVLDAAAL
0701: ENLEIFENSR NGGVSGTLYA QLNQCITASG KRLLKTWLAR PLYNPELIKE RQDAVAILRG ENLPYSLEFR KALSRLPDME RLIARIFSSI EASGRNGDKV
0801: VLYEDVAKKQ LQEFISTLRG CETMVEACSS LRTSLTHDKS RRLRHLLTPG QSLPNISPFI KYFKDAFDWV EAHDSGRVVP HEGADEEYDF TCKTVKELEV
0901: SLTKHLKEQR KLLGDASIKY VTVGKDEYLL EVPESLSGSI PQDYELCSSK KGVFRYWTPT IKKLLKELAQ AKSEKESALK SISQRLIGRF CEHQEEWRQL
1001: VSATAELDVL ISLAFASDSY EGVRCRPVIS SSKSVDVPHL SATGLGHPVL RGDSLGRGSF VPNDVKIGGS KQASFILLTG PNMGGKSTLL RQVCLAVILA
1101: QIGADVPAET FELSPVDRIF VRMGAKDHIM AGQSTFLTEL SETAVMLSSA TRNSLVVLDE LGRGTATSDG QAIAESVLEH FIDKVQCRGM FSTHYHRLSM
1201: DYQTNPQVSL CHMGCQVGEG SGGVEEVTFL YRLTPGACPK SYGVNVARLA GLPDDVLQRA VIKSQEFEGL YGKNHKKADR KMAEMIKRII SGVASDSDTA
1301: TSKHLLSELH YKANTYLRLN N

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.