Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G212500.1 | Wheat | nucleus | 94.0 | 85.41 |
| TraesCS5A01G206300.1 | Wheat | mitochondrion | 94.0 | 73.69 |
| KXG35601 | Sorghum | mitochondrion, nucleus, plastid | 76.6 | 60.74 |
| Zm00001d020424_P002 | Maize | nucleus, plastid | 75.53 | 60.26 |
| GSMUA_Achr5P24510_001 | Banana | nucleus, plastid | 62.38 | 50.59 |
| Os09t0407600-01 | Rice | mitochondrion, nucleus, plastid | 34.43 | 50.07 |
| KRG96523 | Soybean | plastid | 58.41 | 47.45 |
| VIT_07s0005g01370.t01 | Wine grape | plastid | 58.8 | 46.88 |
| Solyc01g079520.2.1 | Tomato | plastid | 58.41 | 46.04 |
| AT4G02070.1 | Thale cress | plastid | 57.16 | 44.64 |
| CDX91808 | Canola | mitochondrion, nucleus, plastid | 56.77 | 44.44 |
| CDX90956 | Canola | plastid | 56.87 | 43.98 |
| Bra000896.1-P | Field mustard | plastid | 56.77 | 43.9 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 21.18 | 25.09 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 14.31 | 23.42 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 15.86 | 19.9 |
| HORVU1Hr1G030930.22 | Barley | plastid | 18.76 | 19.46 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 2.71 | 18.3 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 2.71 | 18.3 |
| HORVU2Hr1G087660.5 | Barley | plastid | 15.67 | 13.81 |
| HORVU2Hr1G118740.5 | Barley | plastid | 9.48 | 11.23 |
| HORVU1Hr1G047640.7 | Barley | plastid | 9.28 | 11.0 |
Protein Annotations
Description
No Description!
Coordinates
chrchr5H:-:478057115..478068513
Molecular Weight (calculated)
114724.0 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.188
Length
1034 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSELLMSLS LVVWSVIFVV IVTGERILEN VHLALTGDLS ERFGSRQMEK FTFLGQGRKD AKGKRPGDPA YDPRTLFLPP QFLKNLTGGQ RQWWEFKSQH
0101: MDKVLFFKMG KFYELYEMDA HVGTKELNLQ YMKGDQPHCG FPEKNLAVNL EKLAQKGYRV LVVEQTETPD QLDLRRRETG TKDKVVRREI CAMVTKGTLT
0201: EGESLLANPD PSYILSVVES YPCSSTKSQD GHTIGVCIID VSTSKFIIGQ FQDDPERHVL CSILSEIRPV EIIKPAKMLS AETERALKNN TRDPLINGLL
0301: PSTEFWDAEK TIHVIEQYYS SSNNLTMSRN TVGVQNNVGC LPDLLGELIE AGDRAYALSA LGGSLFYLKQ ILLDDKLLPC AKFEPLTCSG LINNMQKHMI
0401: LDAAALENLE ILENATGGLS GTLYEQLNHC VTGFGKRLLK RWIVRPLYDR EAILQRQGAI AIFKGVGHEC AMQFRKDLCR LPDMERLLAH LFSRCGENGR
0501: SKSVILYEDT AKRLLQQFTA ALRGCQQMFQ ACSSIRALTG TEGSSLLNDL LSPGKGLPDV SSILDYFRDA FDWSEADHNG RIIPLEGCDP EYDATSCAIE
0601: EIESNLQDYL KEQRKLLRDS SVKYVNVGKD TYLIEVSDSL RGSVPSDYEL QSTKKGVCRY WTPEVKQLIS ELSKVATDKE SILKGILQKL IHLFIEHHSK
0701: WRRLVSVAAE IDVLVSLAVA GDYFEGPTCC PTIRELCGPD DTPTFHARNL GHPIIRSDSL GKGSFVPNNI NMGGPGNASF IILTGPNMGG KSTLLRQVCL
0801: TIILAQIGAN VPAENLELSL VDRIFVRMGA RDHIMAGKST FLVELMETAS VLSSATKNSL VALDELGRGT STSDGQAIAA SVLDYLVHRV QCLGLFSTHY
0901: HKLAVEHEDG KVSLCHMACQ VGTGEGGLEE VTFLYRLTAG SCPKSYGVNV ARLAGIPASV LQRANEKSID FEANYGKRRC ATKDKAICTQ EDNFATIKDL
1001: FRIVKAGNHK EDEAASLSRI REVQMRARVQ AMEA
0101: MDKVLFFKMG KFYELYEMDA HVGTKELNLQ YMKGDQPHCG FPEKNLAVNL EKLAQKGYRV LVVEQTETPD QLDLRRRETG TKDKVVRREI CAMVTKGTLT
0201: EGESLLANPD PSYILSVVES YPCSSTKSQD GHTIGVCIID VSTSKFIIGQ FQDDPERHVL CSILSEIRPV EIIKPAKMLS AETERALKNN TRDPLINGLL
0301: PSTEFWDAEK TIHVIEQYYS SSNNLTMSRN TVGVQNNVGC LPDLLGELIE AGDRAYALSA LGGSLFYLKQ ILLDDKLLPC AKFEPLTCSG LINNMQKHMI
0401: LDAAALENLE ILENATGGLS GTLYEQLNHC VTGFGKRLLK RWIVRPLYDR EAILQRQGAI AIFKGVGHEC AMQFRKDLCR LPDMERLLAH LFSRCGENGR
0501: SKSVILYEDT AKRLLQQFTA ALRGCQQMFQ ACSSIRALTG TEGSSLLNDL LSPGKGLPDV SSILDYFRDA FDWSEADHNG RIIPLEGCDP EYDATSCAIE
0601: EIESNLQDYL KEQRKLLRDS SVKYVNVGKD TYLIEVSDSL RGSVPSDYEL QSTKKGVCRY WTPEVKQLIS ELSKVATDKE SILKGILQKL IHLFIEHHSK
0701: WRRLVSVAAE IDVLVSLAVA GDYFEGPTCC PTIRELCGPD DTPTFHARNL GHPIIRSDSL GKGSFVPNNI NMGGPGNASF IILTGPNMGG KSTLLRQVCL
0801: TIILAQIGAN VPAENLELSL VDRIFVRMGA RDHIMAGKST FLVELMETAS VLSSATKNSL VALDELGRGT STSDGQAIAA SVLDYLVHRV QCLGLFSTHY
0901: HKLAVEHEDG KVSLCHMACQ VGTGEGGLEE VTFLYRLTAG SCPKSYGVNV ARLAGIPASV LQRANEKSID FEANYGKRRC ATKDKAICTQ EDNFATIKDL
1001: FRIVKAGNHK EDEAASLSRI REVQMRARVQ AMEA
0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
Arabidopsis Description
MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.