Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G206300.1 | Wheat | mitochondrion | 77.64 | 41.85 |
KXG35601 | Sorghum | mitochondrion, nucleus, plastid | 73.0 | 39.8 |
Zm00001d020424_P002 | Maize | nucleus, plastid | 71.45 | 39.2 |
TraesCS5D01G212500.1 | Wheat | nucleus | 62.73 | 39.19 |
HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 50.07 | 34.43 |
GSMUA_Achr5P24510_001 | Banana | nucleus, plastid | 57.52 | 32.08 |
KRG96523 | Soybean | plastid | 51.2 | 28.59 |
VIT_07s0005g01370.t01 | Wine grape | plastid | 52.04 | 28.53 |
Solyc01g079520.2.1 | Tomato | plastid | 50.07 | 27.13 |
CDX91808 | Canola | mitochondrion, nucleus, plastid | 49.51 | 26.65 |
AT4G02070.1 | Thale cress | plastid | 49.51 | 26.59 |
Bra000896.1-P | Field mustard | plastid | 49.23 | 26.18 |
CDX90956 | Canola | plastid | 49.09 | 26.1 |
Os01t0180600-01 | Rice | mitochondrion, nucleus | 22.36 | 12.99 |
Os04t0682900-01 | Rice | plastid | 14.21 | 11.76 |
Os05t0274200-01 | Rice | cytosol | 9.7 | 7.32 |
Os04t0680700-01 | Rice | plastid | 5.06 | 7.24 |
Os05t0498300-01 | Rice | cytosol | 6.89 | 6.06 |
Os04t0507000-01 | Rice | mitochondrion | 9.0 | 5.65 |
Os07t0486000-02 | Rice | cytosol | 6.19 | 5.51 |
Os04t0683100-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
Os10t0509000-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
Os04t0682800-01 | Rice | plasma membrane | 0.0 | 0.0 |
Protein Annotations
Description
Similar to DNA mismatch repair protein. (Os09t0407600-01)
Coordinates
chr9:+:14378101..14387289
Molecular Weight (calculated)
78939.0 Da
IEP (calculated)
5.483
GRAVY (calculated)
-0.643
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: ASPSSRRLSN GRSPLLRKQS QITAFFSSPT AKPSPSPLNP RATKPPLAVP SPPPPNPPSP PQEEETAVGR RLRVYWPLDD AWYEGRVEGY DVGSRRHRVR
101: YDDGEEEVVD LASERYEWAA AADEEEVTPQ PSRKLRRLRR MSDAATAKSP GAVDGGGGGD ETADSAEEED EDWKNDAAAE NDSEEVELDD EEDDEEEVVA
201: VKTRKGKKNN PLSTSASTPK LASGLGSASI SGSTLSKKRR KVDAGALDCA KKFSFEPANT TGKVELKVPI SCSQREQPLE NALTALTGEV AERFAQRQAE
301: KFKFLGEGRK DAKGRRPGNP NYDPRTLSLP SQFLNSLTGG QRQWWEFKSQ HMDKVLFFKM GKFYELFEMD AHVGAKELDL QYMKGDKPHC GFPEKNFELN
401: LEKLAKKGYR VLVIEQTETP EQLDLRRKET GVKDKVVRRE ICAMVTKGTL TEGESLLANP DPSYLFSVAE SYQCGSEKDQ DGHTIGVCIV DVSTSKFIVG
501: QFQDDAERHG LCSILSEIRP AEIIKPAKML SPETEKALKS NTRDPLINNL LPSMEFWDAE KTIHEIKQYY CSLDTPGAGA QISSAYLPEL LSELIEAGDK
601: TYALSALGGS LFYLRQSLLD EKLLPCAEFE RLTCSGLTNP IRKHMILDAA ALENLEILEN ARNGGLSGTL YAQLNHCVTG FGKRLLKRWI ARPLYERQAI
701: LQRQSAIATF K
101: YDDGEEEVVD LASERYEWAA AADEEEVTPQ PSRKLRRLRR MSDAATAKSP GAVDGGGGGD ETADSAEEED EDWKNDAAAE NDSEEVELDD EEDDEEEVVA
201: VKTRKGKKNN PLSTSASTPK LASGLGSASI SGSTLSKKRR KVDAGALDCA KKFSFEPANT TGKVELKVPI SCSQREQPLE NALTALTGEV AERFAQRQAE
301: KFKFLGEGRK DAKGRRPGNP NYDPRTLSLP SQFLNSLTGG QRQWWEFKSQ HMDKVLFFKM GKFYELFEMD AHVGAKELDL QYMKGDKPHC GFPEKNFELN
401: LEKLAKKGYR VLVIEQTETP EQLDLRRKET GVKDKVVRRE ICAMVTKGTL TEGESLLANP DPSYLFSVAE SYQCGSEKDQ DGHTIGVCIV DVSTSKFIVG
501: QFQDDAERHG LCSILSEIRP AEIIKPAKML SPETEKALKS NTRDPLINNL LPSMEFWDAE KTIHEIKQYY CSLDTPGAGA QISSAYLPEL LSELIEAGDK
601: TYALSALGGS LFYLRQSLLD EKLLPCAEFE RLTCSGLTNP IRKHMILDAA ALENLEILEN ARNGGLSGTL YAQLNHCVTG FGKRLLKRWI ARPLYERQAI
701: LQRQSAIATF K
0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
Arabidopsis Description
MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.