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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:
  • plastid 2
  • nucleus 3
  • mitochondrion 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G206300.1 Wheat mitochondrion 77.64 41.85
KXG35601 Sorghum mitochondrion, nucleus, plastid 73.0 39.8
Zm00001d020424_P002 Maize nucleus, plastid 71.45 39.2
TraesCS5D01G212500.1 Wheat nucleus 62.73 39.19
HORVU5Hr1G061020.11 Barley endoplasmic reticulum, golgi, plasma membrane 50.07 34.43
GSMUA_Achr5P24510_001 Banana nucleus, plastid 57.52 32.08
KRG96523 Soybean plastid 51.2 28.59
VIT_07s0005g01370.t01 Wine grape plastid 52.04 28.53
Solyc01g079520.2.1 Tomato plastid 50.07 27.13
CDX91808 Canola mitochondrion, nucleus, plastid 49.51 26.65
AT4G02070.1 Thale cress plastid 49.51 26.59
Bra000896.1-P Field mustard plastid 49.23 26.18
CDX90956 Canola plastid 49.09 26.1
Os01t0180600-01 Rice mitochondrion, nucleus 22.36 12.99
Os04t0682900-01 Rice plastid 14.21 11.76
Os05t0274200-01 Rice cytosol 9.7 7.32
Os04t0680700-01 Rice plastid 5.06 7.24
Os05t0498300-01 Rice cytosol 6.89 6.06
Os04t0507000-01 Rice mitochondrion 9.0 5.65
Os07t0486000-02 Rice cytosol 6.19 5.51
Os04t0683100-01 Rice cytosol, nucleus 0.0 0.0
Os10t0509000-01 Rice cytosol, nucleus 0.0 0.0
Os04t0682800-01 Rice plasma membrane 0.0 0.0
Protein Annotations
Gene3D:1.10.1420.10MapMan:14.7.1.3Gene3D:2.30.30.140Gene3D:3.30.420.110Gene3D:3.40.1170.10UniProt:A0A0N7KQS3
ProteinID:BAT08018.1ncoils:CoilInterPro:DNA_mismatch_repair_MSH6_CInterPro:DNA_mismatch_repair_MutS-lik_NInterPro:DNA_mismatch_repair_MutS/MSHInterPro:DNA_mismatch_repair_MutS_N
InterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfInterPro:DNA_mmatch_repair_MutS_con_domGO:GO:0000166GO:GO:0000404GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006259GO:GO:0006281
GO:GO:0006298GO:GO:0006950GO:GO:0006974GO:GO:0008094GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0030983GO:GO:0032300GO:GO:0043570
InterPro:IPR002999InterPro:IPR016151InterPro:IPR036678InterPro:MutS_con_dom_sfEnsemblPlantsGene:Os09g0407600EnsemblPlants:Os09t0407600-01
PFAM:PF01624PFAM:PF05188PFAM:PF05192PIRSF:PIRSF037677PANTHER:PTHR11361PANTHER:PTHR11361:SF31
SMART:SM00333SUPFAM:SSF48334SUPFAM:SSF53150SUPFAM:SSF55271SUPFAM:SSF63748InterPro:Tudor
UniParc:UPI0003938C38SEG:seg::::
Description
Similar to DNA mismatch repair protein. (Os09t0407600-01)
Coordinates
chr9:+:14378101..14387289
Molecular Weight (calculated)
78939.0 Da
IEP (calculated)
5.483
GRAVY (calculated)
-0.643
Length
711 amino acids
Sequence
(BLAST)
001: ASPSSRRLSN GRSPLLRKQS QITAFFSSPT AKPSPSPLNP RATKPPLAVP SPPPPNPPSP PQEEETAVGR RLRVYWPLDD AWYEGRVEGY DVGSRRHRVR
101: YDDGEEEVVD LASERYEWAA AADEEEVTPQ PSRKLRRLRR MSDAATAKSP GAVDGGGGGD ETADSAEEED EDWKNDAAAE NDSEEVELDD EEDDEEEVVA
201: VKTRKGKKNN PLSTSASTPK LASGLGSASI SGSTLSKKRR KVDAGALDCA KKFSFEPANT TGKVELKVPI SCSQREQPLE NALTALTGEV AERFAQRQAE
301: KFKFLGEGRK DAKGRRPGNP NYDPRTLSLP SQFLNSLTGG QRQWWEFKSQ HMDKVLFFKM GKFYELFEMD AHVGAKELDL QYMKGDKPHC GFPEKNFELN
401: LEKLAKKGYR VLVIEQTETP EQLDLRRKET GVKDKVVRRE ICAMVTKGTL TEGESLLANP DPSYLFSVAE SYQCGSEKDQ DGHTIGVCIV DVSTSKFIVG
501: QFQDDAERHG LCSILSEIRP AEIIKPAKML SPETEKALKS NTRDPLINNL LPSMEFWDAE KTIHEIKQYY CSLDTPGAGA QISSAYLPEL LSELIEAGDK
601: TYALSALGGS LFYLRQSLLD EKLLPCAEFE RLTCSGLTNP IRKHMILDAA ALENLEILEN ARNGGLSGTL YAQLNHCVTG FGKRLLKRWI ARPLYERQAI
701: LQRQSAIATF K
Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)
0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
Arabidopsis Description
MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.