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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 19621931
cytosol: 19685898
nucleus: 26035336
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0682800-01 Rice plasma membrane 1.49 0.26
Os04t0682900-01 Rice plastid 0.5 0.12
Os01t0180600-01 Rice mitochondrion, nucleus 0.5 0.08
Os04t0507000-01 Rice mitochondrion 0.0 0.0
Os04t0680700-01 Rice plastid 0.0 0.0
Os05t0274200-01 Rice cytosol 0.0 0.0
Os05t0498300-01 Rice cytosol 0.0 0.0
Os07t0486000-02 Rice cytosol 0.0 0.0
Os09t0407600-01 Rice mitochondrion, nucleus, plastid 0.0 0.0
Os10t0509000-01 Rice cytosol, nucleus 0.0 0.0
Protein Annotations
MapMan:16.2.1.4.1Gene3D:3.90.79.10EntrezGene:4337444UniProt:B9FDD2ProteinID:BAS91698.1InterPro:Cleav_polyA_spec_factor_su5
ProteinID:EEE61929.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0005849GO:GO:0006139GO:GO:0006378GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016787InterPro:NUDIX_hydrolase-like_dom_sfEnsemblPlantsGene:Os04g0683100EnsemblPlants:Os04t0683100-01PFAM:PF13869PIRSF:PIRSF017888
PANTHER:PTHR13047SUPFAM:SSF55811UniParc:UPI00017B7DE9RefSeq:XP_015633521.1SEG:seg:
Description
Similar to Cleavage and polyadenylation specificity factor 5. (Os04t0683100-01);Similar to Cleavage and polyadenylation specificity factor 5. (Os04t0683100-02)
Coordinates
chr4:-:34877821..34881555
Molecular Weight (calculated)
23141.3 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.250
Length
202 amino acids
Sequence
(BLAST)
001: MVSSSSPVVN VYPLANYTFG TKEPKMEKDT SVADRLARMK VNYMKEGMRT SVEAILLVQE HNHPHILLLQ IGNTFCKLPG GRLKPGENEI EGLKRKLCSK
101: LAVNSPSFPP NWQVGECVAV WWRPNFETVM YPYCPPHITK PKECKKLFIV HLSEREYFAV PRNLKLLAVP LFELYDNVQR YGPVISTIPQ QLSRFQFNMV
201: SS
Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.