Factsheet for Os04t0682900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	11.76	14.21
Os05t0274200-01	Rice	cytosol	12.69	11.57
Os07t0486000-02	Rice	cytosol	10.59	11.4
Os05t0498300-01	Rice	cytosol	9.66	10.26
Os01t0180600-01	Rice	mitochondrion, nucleus	13.97	9.8
Os04t0680700-01	Rice	plastid	4.89	8.45
Os04t0507000-01	Rice	mitochondrion	9.2	6.98
Os10t0509000-01	Rice	cytosol, nucleus	0.93	1.48
Os04t0682800-01	Rice	plasma membrane	1.86	1.39
Os04t0683100-01	Rice	cytosol, nucleus	0.12	0.5

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	UniProt:A0A0N7KJY3	ProteinID:BAS91697.1
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005849	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006378
GO:GO:0006810	GO:GO:0006812	GO:GO:0006813	GO:GO:0006950	GO:GO:0006974	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0008324	GO:GO:0009987	GO:GO:0015299	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	GO:GO:0043570
GO:GO:0055085	GO:GO:0098655	GO:GO:1902600	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf
EnsemblPlantsGene:Os04g0682900	EnsemblPlants:Os04t0682900-01	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192
PIRSF:PIRSF037677	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122	SMART:SM00533	SUPFAM:SSF48334	SUPFAM:SSF53150
SUPFAM:SSF55271	UniParc:UPI000393B10C	SEG:seg	:	:	:

Description

DNA mismatch repair protein MSH3Similar to H0124B04.17 protein. (Os04t0682900-01)

Coordinates

chr4:-:34870064..34877172

Molecular Weight (calculated)

93117.1 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.126

Length

859 amino acids

Sequence
(BLAST)

001: WASGSPPTSP VSGVRRGACR RAPRKPLPPI AAHVPPFPAP TSTAIAMGKP KQQVLSRFFS PKPRPSAPAT ADDPPPPPRP PAEPPVAAVV SFSPAKRARA
101: LSVSPKTTAK RAKPSPPPSD YVRRRLLEPP RPPPPAAVNP SGKGYTPLEQ QVVDLKARHP DVLLMVEVGY RFRFFGEDAA VAASVLGIIA HPDHSFLTAS
201: IPTFRLGFHV RRLVAAGHKV GVVRQTETAA IKAAHGGGAA GTPFARGLSA VYTRATIEAA AGELEGGGAP DEGSRYLVCV VDKEVDAMGT EGFEVKIGVV
301: AIEVSTGEVV HGEFMDGVSR NGLEAVLLGL APVEVILGTP ISSATEKLMV AYAGPTSNVR VERTSRLCFS EGGALAELLS LFEKSGVDAP TVENGRHLME
401: MNEENNNPRG IEGIMAMPEL VIHALALSVR YLKGFGMDRI ICFGSSFQPF TANTEMSLSA NTLQQLEVLK NHSDGSLDGS LFQTMNNTCT AFGSRLFRHW
501: LTHPLCDRNQ ICTRHDAVSE ISESIGSQQY STNNLQDEVD MSCSSSVRSD LSTILSSVLR MLAGTLDIQR GITRIFHCKA TAKEFVGVVQ AILTAGKQLQ
601: KLVLEDTDTM SSQHRTVHSP LLRRLINTAS SCTVLANAAT LVSCLNKDAA DQGDMLNLFI ASVDQFPEVA EGHATVEMAK QKLELLITEY RKQLGVRNLE
701: FKTVAGTTHL IELPVDRKVP SSWMKVNSTK KTIRYHTPEV SKNLENLLLA KEKLAVICRT TWNNFLMDFG RYYAQFQATV KSLATLDCLY SLATLAKQNK
801: YVRPNFVREN EASQIHIKDG RHPVVNMKII FYCATDTISN TTGRSHTVMH TSCEAFSLC

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.