Factsheet for Os05t0498300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G066830.9	Barley	cytosol	69.59	89.08
OQU78247	Sorghum	cytosol	86.4	89.04
TraesCS1B01G328200.1	Wheat	cytosol	57.48	87.74
TraesCS1D01G316200.1	Wheat	cytosol	88.26	87.39
TraesCS1A01G315900.1	Wheat	cytosol	87.76	86.8
Zm00001d000329_P002	Maize	cytosol	46.72	82.71
GSMUA_Achr6P29480_001	Banana	cytosol	35.11	76.55
VIT_19s0090g00670.t01	Wine grape	cytosol	67.61	68.98
AT3G20475.1	Thale cress	cytosol	65.76	65.92
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	41.29	65.36
CDY65220	Canola	cytosol	64.28	64.84
KRH73763	Soybean	cytosol	64.52	64.44
GSMUA_Achr6P29470_001	Banana	mitochondrion	35.35	63.84
KRH14375	Soybean	cytosol	64.03	63.79
Solyc10g018540.1.1	Tomato	cytosol	25.71	60.64
CDY19637	Canola	cytosol	63.29	60.16
Bra035777.1-P	Field mustard	cytosol	62.79	60.12
Os07t0486000-02	Rice	cytosol	16.93	17.17
Os05t0274200-01	Rice	cytosol	18.66	16.03
Os10t0509000-01	Rice	cytosol, nucleus	8.41	12.55
Os01t0180600-01	Rice	mitochondrion, nucleus	18.79	12.42
Os04t0680700-01	Rice	plastid	6.06	9.86
Os04t0682900-01	Rice	plastid	10.26	9.66
Os04t0507000-01	Rice	mitochondrion	12.73	9.1
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	6.06	6.89
Os04t0683100-01	Rice	cytosol, nucleus	0.0	0.0
Os04t0682800-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	EntrezGene:4339215	ProteinID:AAT44285.1	ProteinID:BAF17862.1
ProteinID:BAS94731.1	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000003
GO:GO:0000166	GO:GO:0000712	GO:GO:0000794	GO:GO:0000795	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010777	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0043073
GO:GO:0045143	GO:GO:0051026	GO:GO:0051321	EnsemblPlantsGene:Os05g0498300	EnsemblPlants:Os05t0498300-01	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20
UniProt:Q6L4V0	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI00003A9282
RefSeq:XP_015639362.1	SEG:seg	:	:	:	:

Description

MutS-homolog 5DNA mismatch repair protein MutS, core domain containing protein. (Os05t0498300-01)

Coordinates

chr5:+:24522895..24534335

Molecular Weight (calculated)

91342.2 Da

IEP (calculated)

4.844

GRAVY (calculated)

-0.022

Length

809 amino acids

Sequence
(BLAST)

001: MDEEEEEEMS EREVDSQVHM ACVMQGRRVG IAYYDSSMHQ LFVLEIWEDI TEDFPLIDLV KYQSKPSTIY TSTKTDEALL LALQRNDCND EAPAVKLMKS
101: STFSYEQAWH RLMYLKVAAM DEGLSVKERI CFLNSMMDLG SDVQVRAAGG LLAILDNERL LDTLDQMEGG ASIAIDSVAQ ISLDKFLKLD ATAHEALQIF
201: QVDKHPSYMG IGRAKEGFSV FGMLNKCVTP MGKHLLRTWF LRPIIDIDVI NNRLNTISFF LCCEDVMSAL RGTLKSVRDI PHMLKKFNSP SSFCTSSDWH
301: AFLKCICSLL HINKIFEVGI SEHLAIKLQH MNIDLVGKAN SSITEELDYV SDLVVGVIDV QRGKEKGYDT LVKDGLCEEL DELRMVYEEL PDFLEQVSAN
401: EIASFPFSFE CRKAPLIVYV HQIGYLMCFF DEKISDALLI GLPDFEFAFS EEGEERRFYY HTQKTRELDN LLGDIYHKIL DMERAIIRDL VCRVCQFIPQ
501: LTKAVNFAAE LDCILSLAIV ARQNNYVRPI LTEDSILEIQ NGRHALQEMT VDTFVPNDTK IRSSGRINII TGPNYSGKSI YIKQVALVVF LAHIGSFVPA
601: DSAIVGLTDR IFCAMGSKSM TSEQSTFMID LHQVGTMLRH ATSRSLCLLD EFGKGTLTED GIGLLGGTIS HFTDYDCPPK VLLSTHLTQI FTESYLPQSE
701: HIKCYTMSVL NPDEQTDNED VIFLYRLVPG QALLSFGLHC AQLAGVPSEV VQRAVTVLGD IHSKRPIRRM VWEKLAAKDQ QYQDAVTKLL AFDPHKGDLV
801: NFFQEVFPS

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.