Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G328200.1 | Wheat | cytosol | 78.32 | 93.4 |
| Zm00001d000329_P002 | Maize | cytosol | 59.49 | 82.28 |
| GSMUA_Achr6P29480_001 | Banana | cytosol | 45.41 | 77.36 |
| TraesCS1D01G316200.1 | Wheat | cytosol | 97.78 | 75.64 |
| TraesCS1A01G315900.1 | Wheat | cytosol | 97.31 | 75.18 |
| OQU78247 | Sorghum | cytosol | 88.61 | 71.34 |
| Os05t0498300-01 | Rice | cytosol | 89.08 | 69.59 |
| Solyc10g018530.1.1 | Tomato | endoplasmic reticulum, vacuole | 53.32 | 65.95 |
| VIT_19s0090g00670.t01 | Wine grape | cytosol | 69.78 | 55.61 |
| AT3G20475.1 | Thale cress | cytosol | 67.41 | 52.79 |
| KRH73763 | Soybean | cytosol | 66.77 | 52.1 |
| CDY65220 | Canola | cytosol | 65.82 | 51.87 |
| KRH14375 | Soybean | cytosol | 66.46 | 51.72 |
| CDY19637 | Canola | cytosol | 65.03 | 48.3 |
| Bra035777.1-P | Field mustard | cytosol | 64.24 | 48.05 |
| GSMUA_Achr6P29470_001 | Banana | mitochondrion | 27.06 | 38.17 |
| Solyc10g018540.1.1 | Tomato | cytosol | 15.98 | 29.45 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 23.58 | 17.07 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 19.62 | 15.05 |
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 23.42 | 14.31 |
| HORVU1Hr1G030930.22 | Barley | plastid | 21.2 | 13.44 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 2.85 | 11.76 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 2.85 | 11.76 |
| HORVU1Hr1G047640.7 | Barley | plastid | 13.29 | 9.62 |
| HORVU2Hr1G118740.5 | Barley | plastid | 11.87 | 8.59 |
| HORVU2Hr1G087660.5 | Barley | plastid | 15.66 | 8.44 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.2 | Gene3D:3.40.50.300 | UniProt:A0A287G1I3 | InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS_C |
| InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000712 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006298 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030983 | GO:GO:0045143 | GO:GO:0051026 | EnsemblPlantsGene:HORVU1Hr1G066830 |
| EnsemblPlants:HORVU1Hr1G066830.9 | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF05192 | PIRSF:PIRSF005813 | ScanProsite:PS00486 |
| PANTHER:PTHR11361 | PANTHER:PTHR11361:SF20 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
| UniParc:UPI000B46C1C1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:474180115..474216609
Molecular Weight (calculated)
71469.4 Da
IEP (calculated)
6.043
GRAVY (calculated)
-0.041
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MHHRDRFLKL DAAAHEALQI FQVDKHPSYM GIGRAKEGFS VFGILNKCVT PMGRRLLRAW FLRPIIDIEV INNRLNTISF FLCCEEVMSA LRETLKSVRD
101: VPHMLKKFNS PSSSCTSNDW HTFLKCICSL LHINKIFEVG ISEHLANKLQ HMSIDLLEKA NSSITAELDY VSNLVVGVID VQRSKEKGYE TLVKENLCDE
201: LDELRMVYEG LPDFLEQVSA NENASFPFSL ECRKAPLIVY VHQIGYLMCF FDEKISDALL IGLQDFEFAF SEDGEERRFY YHTQKTRELD NLLGDIYHKI
301: LDMERAIIRD LVCRVLQFLP QLTKAVNFAA ELDCTLSLAI VARQNNYVRP ILTEDSILEI QNGRHALQEM TVDTFVPNDT RIRSAGRINI VTGPNYSGKS
401: IYIKQVALVV FLAHIGSFVP ADSAVVGLTD RIFCAMGSKS MTTEQSTFMI DLHQVGTMLR HATSRSLCLL DEFGKGTLTE DGIGLLGGTI SHFANYDYPP
501: KVLLSTHLTE IFTENYLPQS EHIKCCTMSV LNPDGQTSNE DIIFLYRLIP GQALLSFGLH CAQLAGVPSE VIQRAASVLE DIHSKRPVRR MICDNLAAKD
601: KQYEDAMAKL LAFDPRKGDL NHFFEDVFPP EA
101: VPHMLKKFNS PSSSCTSNDW HTFLKCICSL LHINKIFEVG ISEHLANKLQ HMSIDLLEKA NSSITAELDY VSNLVVGVID VQRSKEKGYE TLVKENLCDE
201: LDELRMVYEG LPDFLEQVSA NENASFPFSL ECRKAPLIVY VHQIGYLMCF FDEKISDALL IGLQDFEFAF SEDGEERRFY YHTQKTRELD NLLGDIYHKI
301: LDMERAIIRD LVCRVLQFLP QLTKAVNFAA ELDCTLSLAI VARQNNYVRP ILTEDSILEI QNGRHALQEM TVDTFVPNDT RIRSAGRINI VTGPNYSGKS
401: IYIKQVALVV FLAHIGSFVP ADSAVVGLTD RIFCAMGSKS MTTEQSTFMI DLHQVGTMLR HATSRSLCLL DEFGKGTLTE DGIGLLGGTI SHFANYDYPP
501: KVLLSTHLTE IFTENYLPQS EHIKCCTMSV LNPDGQTSNE DIIFLYRLIP GQALLSFGLH CAQLAGVPSE VIQRAASVLE DIHSKRPVRR MICDNLAAKD
601: KQYEDAMAKL LAFDPRKGDL NHFFEDVFPP EA
001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
Arabidopsis Description
MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.