Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 92.16 | 95.83 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 92.07 | 95.74 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 91.99 | 95.66 |
| Os04t0507000-01 | Rice | mitochondrion | 83.55 | 86.57 |
| KXG26672 | Sorghum | mitochondrion, nucleus | 81.24 | 84.26 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 80.31 | 82.49 |
| KRG90178 | Soybean | mitochondrion | 24.21 | 63.39 |
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 61.13 | 62.67 |
| Solyc09g090870.2.1 | Tomato | mitochondrion | 60.7 | 62.62 |
| Bra015033.1-P | Field mustard | mitochondrion | 58.99 | 61.68 |
| CDX77432 | Canola | mitochondrion | 58.91 | 61.59 |
| CDY49227 | Canola | mitochondrion | 58.65 | 61.21 |
| AT3G24320.1 | Thale cress | mitochondrion | 58.23 | 61.09 |
| KRH33548 | Soybean | nucleus | 58.23 | 60.44 |
| KRG90177 | Soybean | cytosol | 33.84 | 58.9 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 6.99 | 53.59 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 6.99 | 53.59 |
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 13.81 | 15.67 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 8.44 | 15.66 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 11.08 | 14.89 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 9.97 | 14.2 |
| HORVU1Hr1G047640.7 | Barley | plastid | 9.72 | 13.06 |
| HORVU1Hr1G030930.22 | Barley | plastid | 10.66 | 12.54 |
| HORVU2Hr1G118740.5 | Barley | plastid | 8.7 | 11.68 |
Protein Annotations
| MapMan:13.5.8.4 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | UniProt:A0A287ITS8 | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C |
| InterPro:DNA_mismatch_repair_MutS_N | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | GO:GO:0000002 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030983 |
| GO:GO:0032042 | GO:GO:0042651 | EnsemblPlantsGene:HORVU2Hr1G087660 | EnsemblPlants:HORVU2Hr1G087660.5 | InterPro:IPR000305 | InterPro:IPR016151 |
| InterPro:IPR035901 | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01541 | PFAM:PF01624 | ScanProsite:PS00486 |
| PANTHER:PTHR11361 | PANTHER:PTHR11361:SF82 | SMART:SM00465 | SMART:SM00534 | SUPFAM:SSF52540 | SUPFAM:SSF55271 |
| SUPFAM:SSF82771 | UniParc:UPI000B45FAFA | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:629528510..629556050
Molecular Weight (calculated)
129369.0 Da
IEP (calculated)
8.346
GRAVY (calculated)
-0.148
Length
1173 amino acids
Sequence
(BLAST)
(BLAST)
0001: LAAARAPRHF PKPHTSSPAS RPLCPRVAGR RGRKTLAPHR RLAVEMQRLL ASSIVAATPR WLPLADSILR RRRPRRSPLP ILLFNRSWSK PTKVSRSISM
0101: VSSKANKQGD LCNEGMLSHI MWWKERMESC RKQSSVQLTQ RLVYSNILGL DSTLRNGSLK DGTLNMEMLQ FKSKFPREIL LCRVGDFYEA IGFDACILVE
0201: HAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRCGYSVC IVEEIQGPTQ ARARKGRFIS GHAHPGSPYV FGLAEVDHDL EFPDPMPVVG ISRSAKGYCL
0301: ISVLETMKTY SAEEGLTEEA VVTKLRICRY HHLYLHSSLR NNSSGTSRWG EFGEGGLLWG ECNGKSFDWF DGSPIDELLC KVREIYGLDE KTSFRNVTIS
0401: LEGRPQPLYL GTATQIGVIP TEGIPSLPKM LLPPNCAGLP SMYIRDLLLN PPSFDVASAI QEACRLMCSI TCSIPEFTCI PSAKLVKLLE SKEVNHIEFC
0501: RIKNVLDEIM LMNGNTELSA IQNKLLEPAS VVTGLKVDAD ILIKECRFIS KRIGEVISLA GESDQAISSS EYIPKEFFND MESSWKGRVK RVHAEEEFSN
0601: VDVAAQALST AVTEDFLPII VRVKSVMSSH GSSKGEISYA KEHGAVWFKG RRFTPNVWAN TPGEEQIKQL KPAIDSKGRR VGEEWFTTTK VENALARYHE
0701: ACDNAKGKVL ELLRGLSSEL QDKINILVFC SMLLIITKAL FGHVSEGLRR GWVLPAIYPL SKDYSTEESS SEMDLLGLFP YWLNTNQGNA ILNDVSMRSL
0801: FILTGPNGGG KSSMLRSVCA AALLGVCGLM VPAASAVIPH FDSIMLHMKA YDSPADGKSS FQIEMSEIRS LVSRATGRSL VLIDEICRGT ETAKGTCIAG
0901: SIIERLDDAG CLGIVSTHLH GIFDLPLSLN NTDFKAMGTE VVNGYIQPTW RLMDGICRES LAFQTARKEG MPDLIIKRAE ELYLNMSRNN KHTSLTLHRP
1001: LVANSSVNGG LVDRPDGLGN GLEPPTGSFG LLRKDVESIV TAICEDKLLD LYNKRSISEQ VEVVCVTVGA REQPPPSTVG RSSIYIIIRR DNKLYVGQTD
1101: DLVGRLGAHR SKEGMQDATI LYIMVPGKSV ACQLETLLIN QLPSKGFKLT NKADGKHRNF GMSVTSGEAM AAH
0101: VSSKANKQGD LCNEGMLSHI MWWKERMESC RKQSSVQLTQ RLVYSNILGL DSTLRNGSLK DGTLNMEMLQ FKSKFPREIL LCRVGDFYEA IGFDACILVE
0201: HAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRCGYSVC IVEEIQGPTQ ARARKGRFIS GHAHPGSPYV FGLAEVDHDL EFPDPMPVVG ISRSAKGYCL
0301: ISVLETMKTY SAEEGLTEEA VVTKLRICRY HHLYLHSSLR NNSSGTSRWG EFGEGGLLWG ECNGKSFDWF DGSPIDELLC KVREIYGLDE KTSFRNVTIS
0401: LEGRPQPLYL GTATQIGVIP TEGIPSLPKM LLPPNCAGLP SMYIRDLLLN PPSFDVASAI QEACRLMCSI TCSIPEFTCI PSAKLVKLLE SKEVNHIEFC
0501: RIKNVLDEIM LMNGNTELSA IQNKLLEPAS VVTGLKVDAD ILIKECRFIS KRIGEVISLA GESDQAISSS EYIPKEFFND MESSWKGRVK RVHAEEEFSN
0601: VDVAAQALST AVTEDFLPII VRVKSVMSSH GSSKGEISYA KEHGAVWFKG RRFTPNVWAN TPGEEQIKQL KPAIDSKGRR VGEEWFTTTK VENALARYHE
0701: ACDNAKGKVL ELLRGLSSEL QDKINILVFC SMLLIITKAL FGHVSEGLRR GWVLPAIYPL SKDYSTEESS SEMDLLGLFP YWLNTNQGNA ILNDVSMRSL
0801: FILTGPNGGG KSSMLRSVCA AALLGVCGLM VPAASAVIPH FDSIMLHMKA YDSPADGKSS FQIEMSEIRS LVSRATGRSL VLIDEICRGT ETAKGTCIAG
0901: SIIERLDDAG CLGIVSTHLH GIFDLPLSLN NTDFKAMGTE VVNGYIQPTW RLMDGICRES LAFQTARKEG MPDLIIKRAE ELYLNMSRNN KHTSLTLHRP
1001: LVANSSVNGG LVDRPDGLGN GLEPPTGSFG LLRKDVESIV TAICEDKLLD LYNKRSISEQ VEVVCVTVGA REQPPPSTVG RSSIYIIIRR DNKLYVGQTD
1101: DLVGRLGAHR SKEGMQDATI LYIMVPGKSV ACQLETLLIN QLPSKGFKLT NKADGKHRNF GMSVTSGEAM AAH
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.