Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG26672 | Sorghum | mitochondrion, nucleus | 93.7 | 94.61 |
| Os04t0507000-01 | Rice | mitochondrion | 84.33 | 85.07 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 83.01 | 84.04 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 82.84 | 83.87 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 82.49 | 83.51 |
| HORVU2Hr1G087660.5 | Barley | plastid | 82.49 | 80.31 |
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 63.57 | 63.46 |
| KRG90178 | Soybean | mitochondrion | 24.87 | 63.39 |
| Solyc09g090870.2.1 | Tomato | mitochondrion | 62.17 | 62.45 |
| Bra015033.1-P | Field mustard | mitochondrion | 60.68 | 61.76 |
| CDX77432 | Canola | mitochondrion | 60.6 | 61.68 |
| CDY49227 | Canola | mitochondrion | 60.33 | 61.3 |
| AT3G24320.1 | Thale cress | mitochondrion | 59.63 | 60.91 |
| KRH33548 | Soybean | nucleus | 60.16 | 60.8 |
| KRG90177 | Soybean | cytosol | 35.46 | 60.09 |
| Zm00001d000329_P002 | Maize | cytosol | 6.57 | 16.41 |
| Zm00001d001806_P001 | Maize | plastid | 10.77 | 13.65 |
| Zm00001d022028_P005 | Maize | nucleus | 10.6 | 13.6 |
| Zm00001d006382_P004 | Maize | cytosol | 9.89 | 13.37 |
| Zm00001d020424_P002 | Maize | nucleus, plastid | 15.15 | 13.35 |
| Zm00001d039596_P004 | Maize | nucleus | 13.75 | 12.67 |
| Zm00001d013887_P002 | Maize | plastid | 8.76 | 11.72 |
| Zm00001d026647_P005 | Maize | nucleus | 13.4 | 11.44 |
| Zm00001d029152_P001 | Maize | plastid | 4.55 | 8.07 |
| Zm00001d001787_P003 | Maize | cytosol | 0.09 | 0.5 |
Protein Annotations
| MapMan:13.5.8.4 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | UniProt:A0A1D6J9T1 | ProteinID:AQK44670.1 | InterPro:DNA_mismatch_repair_MutS-lik_N |
| InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | GO:GO:0000002 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0030983 | GO:GO:0032042 | GO:GO:0042651 | InterPro:IPR000305 | InterPro:IPR016151 | InterPro:IPR035901 |
| InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01541 | PFAM:PF01624 | ScanProsite:PS00486 | PANTHER:PTHR11361 |
| PANTHER:PTHR11361:SF82 | SMART:SM00534 | SUPFAM:SSF52540 | SUPFAM:SSF55271 | SUPFAM:SSF82771 | UniParc:UPI000842B89C |
| EnsemblPlantsGene:Zm00001d025816 | EnsemblPlants:Zm00001d025816_P002 | EnsemblPlants:Zm00001d025816_T002 | SEG:seg | : | : |
Description
DNA mismatch repair protein
Coordinates
chr10:-:130399900..130438453
Molecular Weight (calculated)
126183.0 Da
IEP (calculated)
7.151
GRAVY (calculated)
-0.086
Length
1142 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHRVLVSSLV AATPRWLPLA DSILRRRRPR CSPLPVLMFD RRAWSKPRKV SRGISVASRK ANKQGEYCDE SMLSHIMWWK EKMERCRKPS SIQLTQRLVY
0101: SNILGLDPNL RNGSLKDGTL NMEILVFKSK FPREVLLCRV GDFYEAIGFD ACILVEHAGL NPFGGLRSDS IPKAGCPVVY HEANEDFHLQ NLRQTLDDLT
0201: RCGYSVCIVE EIQGPTQARA RKSRFISGHA HPGSPYVFGL AEVDHDVEFP DPMPVVGISH SAKGYCLISV LETMKTYSAE EGLTEEAIVT KLRICRYHHL
0301: YLHNSLKNNS SGTSRWGEFG EGGLLWGECS GKSFEWFDGS PIQELLCKVR EIYGLDEKTV FRDVTVSLEG RPQPLHLGTA TQIGVIPTEG IPSLLRMVLP
0401: SNCGGLPSMY IRDLLLNPPS FEVAAAIQEA CRLMGNITCS IPEFTCISAA KLVKLLESKE VNHIEFCRIK NVLDEIMLMN RDAELSAILH ELLVPASVAT
0501: GFKVEADMLM NGCSIISQRI AEVISLGVES DQAITSLEYI PKEFFNDMES SWKGRVKRIH AEEEFANVDR AAEALSIAVI EDFMPIISRV KSVVSSNGGL
0601: KGEIGYAKEH EAVWFKGKRF IPNVWANTPG EQQIKQLKPA IDSKGRKVGE EWFTTSKVEN ALARYHEACD NARNKVLELL RGLSSELQDK INILVFCSTL
0701: LIIAKALFGH VSEARRRGWM LPTISPLSKD CVVEESSSAM DLVGLFPYWL DVNQGNAILN DVHMHSLFVL TGPNGGGKSS MLRSVCAAVL LGICGLMVPS
0801: TSAVIPHFDS IMLHMKAYDS PADGKSSFQI EMSEIRALVS RATARSLVLI DEICRGTETA KGTCIAGSII ERLDNVGCLG IISTHLHGIF DLPLSLSNTD
0901: FKAMGTEVVD GCIHPTWKLI DGICRESLAF QTARREGMPD LIITRAEELY LSMSTNNKQG ASVAHNEPPN GSPSVNGLVE EPESLKNRLE MLPGTFEPLR
1001: KEVESAVTTM CKKILSDLYN KSSIPELVEV VCVAVGAREQ PPPSTVGRSS IYVIIRSDNR LYVGQTDDLL GRLNAHRSKE GMRDATVLYV LVPGKSVACQ
1101: LETLLINQLP SRGFKLINKA DGKHRNFGIS RISGEAVATG RN
0101: SNILGLDPNL RNGSLKDGTL NMEILVFKSK FPREVLLCRV GDFYEAIGFD ACILVEHAGL NPFGGLRSDS IPKAGCPVVY HEANEDFHLQ NLRQTLDDLT
0201: RCGYSVCIVE EIQGPTQARA RKSRFISGHA HPGSPYVFGL AEVDHDVEFP DPMPVVGISH SAKGYCLISV LETMKTYSAE EGLTEEAIVT KLRICRYHHL
0301: YLHNSLKNNS SGTSRWGEFG EGGLLWGECS GKSFEWFDGS PIQELLCKVR EIYGLDEKTV FRDVTVSLEG RPQPLHLGTA TQIGVIPTEG IPSLLRMVLP
0401: SNCGGLPSMY IRDLLLNPPS FEVAAAIQEA CRLMGNITCS IPEFTCISAA KLVKLLESKE VNHIEFCRIK NVLDEIMLMN RDAELSAILH ELLVPASVAT
0501: GFKVEADMLM NGCSIISQRI AEVISLGVES DQAITSLEYI PKEFFNDMES SWKGRVKRIH AEEEFANVDR AAEALSIAVI EDFMPIISRV KSVVSSNGGL
0601: KGEIGYAKEH EAVWFKGKRF IPNVWANTPG EQQIKQLKPA IDSKGRKVGE EWFTTSKVEN ALARYHEACD NARNKVLELL RGLSSELQDK INILVFCSTL
0701: LIIAKALFGH VSEARRRGWM LPTISPLSKD CVVEESSSAM DLVGLFPYWL DVNQGNAILN DVHMHSLFVL TGPNGGGKSS MLRSVCAAVL LGICGLMVPS
0801: TSAVIPHFDS IMLHMKAYDS PADGKSSFQI EMSEIRALVS RATARSLVLI DEICRGTETA KGTCIAGSII ERLDNVGCLG IISTHLHGIF DLPLSLSNTD
0901: FKAMGTEVVD GCIHPTWKLI DGICRESLAF QTARREGMPD LIITRAEELY LSMSTNNKQG ASVAHNEPPN GSPSVNGLVE EPESLKNRLE MLPGTFEPLR
1001: KEVESAVTTM CKKILSDLYN KSSIPELVEV VCVAVGAREQ PPPSTVGRSS IYVIIRSDNR LYVGQTDDLL GRLNAHRSKE GMRDATVLYV LVPGKSVACQ
1101: LETLLINQLP SRGFKLINKA DGKHRNFGIS RISGEAVATG RN
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.