Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 98.05 | 98.05 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 97.87 | 97.87 |
| HORVU2Hr1G087660.5 | Barley | plastid | 95.74 | 92.07 |
| Os04t0507000-01 | Rice | mitochondrion | 86.7 | 86.4 |
| KXG26672 | Sorghum | mitochondrion, nucleus | 84.4 | 84.17 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 83.51 | 82.49 |
| KRG90178 | Soybean | mitochondrion | 25.27 | 63.62 |
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 63.74 | 62.85 |
| Solyc09g090870.2.1 | Tomato | mitochondrion | 63.12 | 62.62 |
| Bra015033.1-P | Field mustard | mitochondrion | 61.17 | 61.5 |
| CDX77432 | Canola | mitochondrion | 61.08 | 61.41 |
| CDY49227 | Canola | mitochondrion | 60.82 | 61.03 |
| AT3G24320.1 | Thale cress | mitochondrion | 60.28 | 60.82 |
| KRH33548 | Soybean | nucleus | 60.02 | 59.91 |
| KRG90177 | Soybean | cytosol | 34.84 | 58.31 |
| TraesCS2A01G171900.1 | Wheat | cytosol | 10.46 | 14.57 |
| TraesCS1A01G179700.1 | Wheat | plastid | 10.2 | 13.82 |
| TraesCS1A01G315900.1 | Wheat | cytosol | 9.93 | 13.69 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 10.99 | 12.93 |
| TraesCS3A01G117500.1 | Wheat | mitochondrion, nucleus | 13.92 | 12.85 |
| TraesCS5A01G206300.1 | Wheat | mitochondrion | 14.63 | 12.51 |
| TraesCS2A01G588000.2 | Wheat | plastid | 10.11 | 12.45 |
Protein Annotations
| MapMan:13.5.8.4 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N |
| InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | GO:GO:0000002 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030983 | GO:GO:0032042 |
| GO:GO:0042651 | InterPro:IPR000305 | InterPro:IPR016151 | InterPro:IPR035901 | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PFAM:PF01541 | PFAM:PF01624 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF82 | SMART:SM00534 |
| SUPFAM:SSF52540 | SUPFAM:SSF55271 | SUPFAM:SSF82771 | EnsemblPlantsGene:TraesCS2A01G362100 | EnsemblPlants:TraesCS2A01G362100.1 | TIGR:cd03243 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:606509763..606527712
Molecular Weight (calculated)
124434.0 Da
IEP (calculated)
7.703
GRAVY (calculated)
-0.105
Length
1128 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQRLLASSVV AAAPRWLPVA DSILRRRRPR RSPLPILLFN RSWSKPKKVS RSISMVSSKV NKQGNLCNEG MLSHIMWWKE RMESCRKPSS VQLTQRLVYS
0101: NILGLDPTLR NGSLKDGTLN MEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEHAGLN PFGGLRSDSI PKAGCPIMNL RQTLDDLTRC GYSVCIVEEI
0201: QGPTQARARK GRFISGHAHP GSPYVFGLAE VDHDLEFPDP MPVVGISRSA KGYCLISVLE TMKTYSAEEG LTEEAIVTKL RICRYHHLYL HSSLRNNSSG
0301: TSRWGEFGEG GLLWGECNGK SFDWFDGSPI DELLCKVREI YGLDEKTSFR NVTISLEGRP QPLYLGTATQ IGVIPTEGIP SLPKMLLPPN CAGLPSMYIR
0401: DLLLNPPSFD VASAIQEACR LMCSITCSIP EFTCIPSAKL VKLLESKEVN HIEFCRIKNV LDEIMLMNGN TELSAIQNKL LEPASVVTGL KVDADILIKE
0501: CRFISKRIGE VISLAGESDQ AITSSEYIPK EFFNDMESFW KGRVKRVHAE EEFTNVDVAA QALSTVVTED FLPIIVRVKA VMSSHGSSKG EISYAKEHGA
0601: VWFKGRRLAP TVWANTPGEE QIKQLKPAID SKGRRVGEEW FTTTKVENAL ARYHEACDNA KGKVLELLRG LSSELQDKIN ILVFCSTLLI ITKALFGHVS
0701: EGLRRGWVLP AIYPLSKDYS TEESSSEMDL LRLFPYWLDT NQGNAILNDV NMRSLFILTG PNGGGKSSML RSVCAAALLG VCGLMVPAAS AVIPHFDSIM
0801: LHMKAYDSPA DGKSSFQIEM SEIRSLVSRA TGRSLVLIDE ICRGTETAKG TCIAGSIIER LDDVGCLGIV STHLHGIFDL PLSLNNTDFK AMGTEVVNGC
0901: IQPTWRLMDG ICRESLAFQT ARKEGMPDLI IKRAEELYLT MSRSNKQTSS TAHHGPSVGY SNVNDLVDMP DGLGNFFEPP SGATGLLPKD VESIVTTICK
1001: DKLLDLYNKR SISELVEVVC VTVGAREQPP PSTVGRSSIY IIIRRDNKLY VGQTDDLVGR LGAHRSKEGM QDATILYIIV PGKSVACQLE TLLINQLPTK
1101: GFKLTNKADG KHRNFGMSVT SGEAMAAH
0101: NILGLDPTLR NGSLKDGTLN MEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEHAGLN PFGGLRSDSI PKAGCPIMNL RQTLDDLTRC GYSVCIVEEI
0201: QGPTQARARK GRFISGHAHP GSPYVFGLAE VDHDLEFPDP MPVVGISRSA KGYCLISVLE TMKTYSAEEG LTEEAIVTKL RICRYHHLYL HSSLRNNSSG
0301: TSRWGEFGEG GLLWGECNGK SFDWFDGSPI DELLCKVREI YGLDEKTSFR NVTISLEGRP QPLYLGTATQ IGVIPTEGIP SLPKMLLPPN CAGLPSMYIR
0401: DLLLNPPSFD VASAIQEACR LMCSITCSIP EFTCIPSAKL VKLLESKEVN HIEFCRIKNV LDEIMLMNGN TELSAIQNKL LEPASVVTGL KVDADILIKE
0501: CRFISKRIGE VISLAGESDQ AITSSEYIPK EFFNDMESFW KGRVKRVHAE EEFTNVDVAA QALSTVVTED FLPIIVRVKA VMSSHGSSKG EISYAKEHGA
0601: VWFKGRRLAP TVWANTPGEE QIKQLKPAID SKGRRVGEEW FTTTKVENAL ARYHEACDNA KGKVLELLRG LSSELQDKIN ILVFCSTLLI ITKALFGHVS
0701: EGLRRGWVLP AIYPLSKDYS TEESSSEMDL LRLFPYWLDT NQGNAILNDV NMRSLFILTG PNGGGKSSML RSVCAAALLG VCGLMVPAAS AVIPHFDSIM
0801: LHMKAYDSPA DGKSSFQIEM SEIRSLVSRA TGRSLVLIDE ICRGTETAKG TCIAGSIIER LDDVGCLGIV STHLHGIFDL PLSLNNTDFK AMGTEVVNGC
0901: IQPTWRLMDG ICRESLAFQT ARKEGMPDLI IKRAEELYLT MSRSNKQTSS TAHHGPSVGY SNVNDLVDMP DGLGNFFEPP SGATGLLPKD VESIVTTICK
1001: DKLLDLYNKR SISELVEVVC VTVGAREQPP PSTVGRSSIY IIIRRDNKLY VGQTDDLVGR LGAHRSKEGM QDATILYIIV PGKSVACQLE TLLINQLPTK
1101: GFKLTNKADG KHRNFGMSVT SGEAMAAH
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.