Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G119400.1 | Wheat | mitochondrion | 96.4 | 96.4 |
TraesCS3B01G136600.1 | Wheat | mitochondrion | 96.4 | 96.4 |
Os01t0180600-01 | Rice | mitochondrion, nucleus | 77.17 | 77.04 |
KXG31683 | Sorghum | mitochondrion, nucleus | 72.91 | 72.38 |
Zm00001d039596_P004 | Maize | nucleus | 71.36 | 70.38 |
GSMUA_Achr7P13290_001 | Banana | cytosol, plastid | 52.37 | 57.45 |
Solyc07g018350.2.1 | Tomato | nucleus | 36.58 | 55.12 |
VIT_11s0016g04090.t01 | Wine grape | nucleus | 48.36 | 52.58 |
CDY25338 | Canola | plastid | 46.4 | 51.55 |
CDY47171 | Canola | mitochondrion, nucleus | 45.83 | 51.24 |
Bra028373.1-P | Field mustard | mitochondrion, plastid | 46.48 | 51.22 |
AT3G24495.1 | Thale cress | mitochondrion | 46.4 | 51.13 |
KRH39265 | Soybean | mitochondrion | 44.93 | 50.88 |
KRH48416 | Soybean | cytosol | 45.01 | 48.72 |
TraesCS5A01G206300.1 | Wheat | mitochondrion | 25.37 | 23.5 |
TraesCS2A01G171900.1 | Wheat | cytosol | 13.26 | 20.0 |
TraesCS1A01G135100.1 | Wheat | nucleus | 14.57 | 18.56 |
TraesCS1A01G315900.1 | Wheat | cytosol | 11.87 | 17.73 |
TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 12.85 | 13.92 |
TraesCS2A01G588000.2 | Wheat | plastid | 8.27 | 11.03 |
TraesCS1A01G179700.1 | Wheat | plastid | 7.2 | 10.58 |
Protein Annotations
Gene3D:1.10.1420.10 | MapMan:14.7.1.4 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_Msh2 |
InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 |
GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR016151 | InterPro:IPR036678 | InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase |
PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 | PFAM:PF05192 | PIRSF:PIRSF005813 | ScanProsite:PS00486 |
PANTHER:PTHR11361 | PANTHER:PTHR11361:SF121 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
SUPFAM:SSF53150 | SUPFAM:SSF55271 | EnsemblPlantsGene:TraesCS3A01G117500 | EnsemblPlants:TraesCS3A01G117500.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:87372551..87382806
Molecular Weight (calculated)
134532.0 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.281
Length
1222 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQPRRQQQQS ILPFLHPRQG PAQEAPGAGR TPERPPRPPA ASSVDGIMER LVRPPSQGRN KDAAQIRNAE RALPGRNEDT SNEQPSASFP VRHNGKYSRG
0101: TVLFAEHSTD TTPPQEPLKF SARSSTDEFV RASTLFPELG YPTLLQECPK KLSSECPSNQ YVQANSVFEA FDVQTPSQDP LKRIFSGPFH GADTPLSEYR
0201: SYPIPLQHPS KKSSSGSSSG EYLRAVTPLG LDSNDTPIAK HSKKLFSGSS DHSYIKATNL FPEFDSNGTP LQNHLNKFSV SMNGKHIGAP ATLFPELDSV
0301: LLKPETPVTR AVAPRGKRVQ QDQCMTANNS QSPLWGSNKK VKSAHCSPAG KMAHDEMAES ARSKFEWLNP LNIRDANKRR PDDPLYDKRT LFIPPDALRK
0401: MSTSQKQYWT IKCKYMDVLL FFKVGKFYEL YEVDAEIGQK ELDWKMTISG VGKCRQVGIS ESGIDDAVEK LLARGYKVGR IEQMESAAQA KSRGPNSVIE
0501: RKLAHVSTPS TAADSNIGPD AVHLLALKEV TLASNGSRVY GFAFLDYAAL KIWVGSLQDD DSSAALGALL VQVSPREIIY ESSGLSRESR KSMIKYASAG
0601: SVKMQLTPLP GTGFSDASQI QMLVHSKGYF KASTDSWLSA LDYSVNRDAV IFALGGLIGH LTRLMLDDAL KNGEVLPYNV YQTCLRMDGQ TLVNLEIFGN
0701: NFDGGSSGTL YKHLNHCITA SGKRLLRRWI CHPLKDVDAI NRRLDVVEGF IQHCGVGSIT LYYLRKIPDL ERLLGRIRST VGLTSAVLLP FVGEKILKRR
0801: IKTFGMLIKG LRVGIDLLSA LRRDDHGIPA LSKSVDIPTL SSLDELVHQF EEDIHNDFEQ YQDHDIKDGD ATTLANLVEH FVGKATEWSL VINAISTVDV
0901: LRSFAAMALS SFGTMCRPCI LLKDKSPILR MKGLWHPYAF AESGTGLVPN DLSLGQDLSG HNRFALLLTG PNMGGKSTIM RATCLAIVLA QLGCYVPCIS
1001: CELTLADSIF TRLGATDRIM SGESTFLVEC SETASVLQNA TEDSLVLLDE LGRGTSTFDG YAIAYAVFRH LVEQVRCRLL FATHYHPLTK EFASHPHVSL
1101: QHMACMLRPR SGGNGEMELT FLYRLASGAS PESYGLQVAT MAGIPKSIVE KAAVAGEMMK SRIAGNFRSS EGRAEFSTLH EDWLQTILAI GGVKDAHLDE
1201: DTMDTMFCVA QELKSHFRKV GR
0101: TVLFAEHSTD TTPPQEPLKF SARSSTDEFV RASTLFPELG YPTLLQECPK KLSSECPSNQ YVQANSVFEA FDVQTPSQDP LKRIFSGPFH GADTPLSEYR
0201: SYPIPLQHPS KKSSSGSSSG EYLRAVTPLG LDSNDTPIAK HSKKLFSGSS DHSYIKATNL FPEFDSNGTP LQNHLNKFSV SMNGKHIGAP ATLFPELDSV
0301: LLKPETPVTR AVAPRGKRVQ QDQCMTANNS QSPLWGSNKK VKSAHCSPAG KMAHDEMAES ARSKFEWLNP LNIRDANKRR PDDPLYDKRT LFIPPDALRK
0401: MSTSQKQYWT IKCKYMDVLL FFKVGKFYEL YEVDAEIGQK ELDWKMTISG VGKCRQVGIS ESGIDDAVEK LLARGYKVGR IEQMESAAQA KSRGPNSVIE
0501: RKLAHVSTPS TAADSNIGPD AVHLLALKEV TLASNGSRVY GFAFLDYAAL KIWVGSLQDD DSSAALGALL VQVSPREIIY ESSGLSRESR KSMIKYASAG
0601: SVKMQLTPLP GTGFSDASQI QMLVHSKGYF KASTDSWLSA LDYSVNRDAV IFALGGLIGH LTRLMLDDAL KNGEVLPYNV YQTCLRMDGQ TLVNLEIFGN
0701: NFDGGSSGTL YKHLNHCITA SGKRLLRRWI CHPLKDVDAI NRRLDVVEGF IQHCGVGSIT LYYLRKIPDL ERLLGRIRST VGLTSAVLLP FVGEKILKRR
0801: IKTFGMLIKG LRVGIDLLSA LRRDDHGIPA LSKSVDIPTL SSLDELVHQF EEDIHNDFEQ YQDHDIKDGD ATTLANLVEH FVGKATEWSL VINAISTVDV
0901: LRSFAAMALS SFGTMCRPCI LLKDKSPILR MKGLWHPYAF AESGTGLVPN DLSLGQDLSG HNRFALLLTG PNMGGKSTIM RATCLAIVLA QLGCYVPCIS
1001: CELTLADSIF TRLGATDRIM SGESTFLVEC SETASVLQNA TEDSLVLLDE LGRGTSTFDG YAIAYAVFRH LVEQVRCRLL FATHYHPLTK EFASHPHVSL
1101: QHMACMLRPR SGGNGEMELT FLYRLASGAS PESYGLQVAT MAGIPKSIVE KAAVAGEMMK SRIAGNFRSS EGRAEFSTLH EDWLQTILAI GGVKDAHLDE
1201: DTMDTMFCVA QELKSHFRKV GR
0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK
Arabidopsis Description
MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.