Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 2
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g04090.t01 | Wine grape | nucleus | 59.87 | 59.34 |
| Solyc07g018350.2.1 | Tomato | nucleus | 42.28 | 58.08 |
| KRH39265 | Soybean | mitochondrion | 54.94 | 56.72 |
| CDY25338 | Canola | plastid | 55.21 | 55.91 |
| Bra028373.1-P | Field mustard | mitochondrion, plastid | 55.03 | 55.27 |
| AT3G24495.1 | Thale cress | mitochondrion | 55.03 | 55.27 |
| CDY47171 | Canola | mitochondrion, nucleus | 53.95 | 54.99 |
| KRH48416 | Soybean | cytosol | 53.95 | 53.23 |
| TraesCS3B01G136600.1 | Wheat | mitochondrion | 57.9 | 52.78 |
| TraesCS3D01G119400.1 | Wheat | mitochondrion | 57.54 | 52.45 |
| TraesCS3A01G117500.1 | Wheat | mitochondrion, nucleus | 57.45 | 52.37 |
| Os01t0180600-01 | Rice | mitochondrion, nucleus | 56.37 | 51.31 |
| KXG31683 | Sorghum | mitochondrion, nucleus | 55.39 | 50.12 |
| Zm00001d039596_P004 | Maize | nucleus | 54.58 | 49.07 |
| GSMUA_Achr6P13480_001 | Banana | cytosol | 6.64 | 28.79 |
| GSMUA_Achr5P24510_001 | Banana | nucleus, plastid | 28.46 | 24.86 |
| GSMUA_Achr8P08020_001 | Banana | cytosol | 10.5 | 23.68 |
| GSMUA_Achr6P29480_001 | Banana | cytosol | 6.73 | 20.22 |
| GSMUA_Achr1P01790_001 | Banana | mitochondrion | 3.95 | 19.73 |
| GSMUA_AchrUn_... | Banana | plastid | 6.55 | 19.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.49 | 18.5 |
| GSMUA_Achr8P08030_001 | Banana | cytosol | 4.49 | 16.78 |
| GSMUA_Achr1P01780_001 | Banana | nucleus | 2.78 | 16.76 |
| GSMUA_Achr6P13490_001 | Banana | cytosol | 9.25 | 15.63 |
| GSMUA_Achr1P01810_001 | Banana | extracellular, plasma membrane | 4.31 | 15.05 |
| GSMUA_Achr8P12760_001 | Banana | cytosol | 2.42 | 14.36 |
| GSMUA_Achr8P12780_001 | Banana | cytosol, nucleus, plasma membrane | 7.45 | 13.86 |
| GSMUA_Achr8P12770_001 | Banana | extracellular, nucleus, plasma membrane | 2.42 | 11.89 |
| GSMUA_Achr6P29470_001 | Banana | mitochondrion | 4.76 | 11.83 |
| GSMUA_Achr7P04320_001 | Banana | plastid | 8.53 | 10.44 |
| GSMUA_Achr1P01820_001 | Banana | plastid | 2.15 | 10.21 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.4 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N |
| InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0030983 | EnsemblPlantsGene:GSMUA_Achr7G13290_001 | EnsemblPlants:GSMUA_Achr7P13290_001 | EnsemblPlants:GSMUA_Achr7T13290_001 | InterPro:IPR016151 |
| InterPro:IPR036678 | UniProt:M0TH66 | InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01624 |
| PFAM:PF05188 | PFAM:PF05192 | PIRSF:PIRSF037677 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF121 |
| SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | SUPFAM:SSF53150 | SUPFAM:SSF55271 |
| UniParc:UPI00029513B5 | SEG:seg | : | : | : | : |
Description
DNA mismatch repair protein Msh6-2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G13290_001]
Coordinates
chr7:-:10697493..10714506
Molecular Weight (calculated)
123274.0 Da
IEP (calculated)
7.442
GRAVY (calculated)
-0.244
Length
1114 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSWFLFSSDL AWQINDRTMQ KRQTSILAFL KKPSAENRRC DGPSPLSDVL PGPHFGSAGA EKPSDEPFPE IRGTDTPPEK PCCQIFPAGA PEIKGDDSRS
0101: ASPFSSVMRK FVKEDKSEGF RKGNQEGSGS FVRHSKSNSA EKSRVRNEMP SDEHSKTHTS IFKEKCDGMD LHFGPDSDVL GPETPATRPL VPRLKRVQDG
0201: LTDFNDKQSS LLVGSGKRLK SDFDSVVGKH IQEEVCESAS SKFDWLNPSN IRDANGRRPS DPLYDKRTLY IPPDALKKMS ASQRQYWSVK CQYMDVVLFF
0301: KVGKFYELYE LDAEIGQREL DWKMTISGVG KCRQVGISEA GIDDAVLKLT ARGYKVGRME QLETSEQAKA RGATSVIQRK LVSVSTPCTP IDGSIGLEAV
0401: HLLALKEQDC GSRNGSTIYG FAFLDYAALK FWVGSICDEN SAALGALLMQ ISPREIIYER SGLSKETHMT LTKYASAGSM KTQLTPTTPN ADFLAASEIM
0501: KLINSRGYFK GSSSSWSSVF DYSVNHDLIL CALGGLIDHL SRLMLDDTLR NGELLPYHVY RNCLRMDGQT LLNLEIFSNN IDGSLSGTLY KHLDHCITAS
0601: GKRLLRRWIC HPLKDVTDVN HRLNIVDGFI KHSGIISIIV GYLHRLPDLE RLLGRVRSTV GSSSTLLLPF VGERVLKQRV KGFGSLVKGL RIGIDLLNAL
0701: EKEDHGIISL SKVVNLPTLS GLDELLHQFE VALDDDFPRY QDHKVKDSDA ETLAVLVELF SGKATEWSHI INALNRIDVL QAFATVTVSS CRPMSRPTFS
0801: EANSYSTNLH QDNAGPILHM KGLWHPYAVA DNGNGLVPND IYLGEDSMAC HPRALLLTGP NMGGKSTLLR ATCLAVILAQ LGCYVPCEVC LLSPVDTIFT
0901: RLGATDRIMS GESTFFVECS ETASVLRNAT KDSLVLLDEL GRGTSTFDGY AIAYSVFRHL VEKVCCRLLF ATHYHPLTKE FASHPRVSLQ HMACAFRPKD
1001: GISYNGDQDL IFLYKLAAGA CPESYGLQVA LMAGLPRPVV QAAGCASQKM KLTISQNFKS SEGRSQFSTL HEEWLKTLLD ISKLSISGWN EDASDTLLCL
1101: WHEVRSFYKP GNSR
0101: ASPFSSVMRK FVKEDKSEGF RKGNQEGSGS FVRHSKSNSA EKSRVRNEMP SDEHSKTHTS IFKEKCDGMD LHFGPDSDVL GPETPATRPL VPRLKRVQDG
0201: LTDFNDKQSS LLVGSGKRLK SDFDSVVGKH IQEEVCESAS SKFDWLNPSN IRDANGRRPS DPLYDKRTLY IPPDALKKMS ASQRQYWSVK CQYMDVVLFF
0301: KVGKFYELYE LDAEIGQREL DWKMTISGVG KCRQVGISEA GIDDAVLKLT ARGYKVGRME QLETSEQAKA RGATSVIQRK LVSVSTPCTP IDGSIGLEAV
0401: HLLALKEQDC GSRNGSTIYG FAFLDYAALK FWVGSICDEN SAALGALLMQ ISPREIIYER SGLSKETHMT LTKYASAGSM KTQLTPTTPN ADFLAASEIM
0501: KLINSRGYFK GSSSSWSSVF DYSVNHDLIL CALGGLIDHL SRLMLDDTLR NGELLPYHVY RNCLRMDGQT LLNLEIFSNN IDGSLSGTLY KHLDHCITAS
0601: GKRLLRRWIC HPLKDVTDVN HRLNIVDGFI KHSGIISIIV GYLHRLPDLE RLLGRVRSTV GSSSTLLLPF VGERVLKQRV KGFGSLVKGL RIGIDLLNAL
0701: EKEDHGIISL SKVVNLPTLS GLDELLHQFE VALDDDFPRY QDHKVKDSDA ETLAVLVELF SGKATEWSHI INALNRIDVL QAFATVTVSS CRPMSRPTFS
0801: EANSYSTNLH QDNAGPILHM KGLWHPYAVA DNGNGLVPND IYLGEDSMAC HPRALLLTGP NMGGKSTLLR ATCLAVILAQ LGCYVPCEVC LLSPVDTIFT
0901: RLGATDRIMS GESTFFVECS ETASVLRNAT KDSLVLLDEL GRGTSTFDGY AIAYSVFRHL VEKVCCRLLF ATHYHPLTKE FASHPRVSLQ HMACAFRPKD
1001: GISYNGDQDL IFLYKLAAGA CPESYGLQVA LMAGLPRPVV QAAGCASQKM KLTISQNFKS SEGRSQFSTL HEEWLKTLLD ISKLSISGWN EDASDTLLCL
1101: WHEVRSFYKP GNSR
0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK
Arabidopsis Description
MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.