Factsheet for GSMUA_Achr8P12780_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P01790_001	Banana	mitochondrion	8.18	21.97
GSMUA_Achr6P13480_001	Banana	cytosol	8.51	19.84
GSMUA_Achr6P29480_001	Banana	cytosol	10.85	17.52
GSMUA_Achr8P08020_001	Banana	cytosol	12.85	15.59
CDX95680	Canola	cytosol	3.34	15.04
Solyc09g090890.1.1	Tomato	extracellular	3.51	14.58
GSMUA_Achr1P01780_001	Banana	nucleus	3.84	12.43
GSMUA_AchrUn_...	Banana	nucleus	14.02	12.14
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	5.84	10.97
GSMUA_Achr7P04320_001	Banana	plastid	13.02	8.57
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	16.86	7.92
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	13.86	7.45
GSMUA_Achr6P13490_001	Banana	cytosol	5.51	5.01
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	1.0	2.64
GSMUA_Achr8P12760_001	Banana	cytosol	0.5	1.6
GSMUA_Achr1P01820_001	Banana	plastid	0.5	1.28
GSMUA_Achr6P29470_001	Banana	mitochondrion	0.83	1.12
GSMUA_Achr8P08030_001	Banana	cytosol	0.33	0.67
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:GIY-YIG_endonuc	InterPro:GIY-YIG_endonuc_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSMUA_Achr8G12780_001	EnsemblPlants:GSMUA_Achr8P12780_001	EnsemblPlants:GSMUA_Achr8T12780_001	InterPro:IPR000305
InterPro:IPR035901	UniProt:M0TPY1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01541	PIRSF:PIRSF037677
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SMART:SM00534	SUPFAM:SSF52540	SUPFAM:SSF82771
UniParc:UPI000296C0FA	:	:	:	:	:

Description

DNA mismatch repair protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G12780_001]

Coordinates

chr8:+:9537269..9548714

Molecular Weight (calculated)

65912.2 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.080

Length

599 amino acids

Sequence
(BLAST)

001: MRGESGQETS SLEFIPDEFF ENMESSWKGR VKRCHAEEAF AEVDSAAMAL SIAVMEDFSP IVLRVKSLMN PFGGPKGEIC YAREHGAVWF KGRRFVPAVW
101: ANTTGEEQIK QLRPATDSKG RKVGEEWFTT SKVEEALNRY HEASDNARAK VLNLLRGLSS DLQTKMNILV FSSILLVIAN ALFSHVSEGR RREWVFPEIY
201: DFFDSKENFL AEVNSKMELS GLSPYWFDVA HGNATKNTVN LNSLFLLTGP NGGGKSSLLR SICAAALLGI CGLMVPAESA LIPNFDSIML HMKAYDSPAD
301: GKSSFQIEMS EIRSIVNGST ARSLVLVDEI CRGTETAKGT CIAGSIVETL DHIGCLGIVS THLHGIFDLP LATRSTVYKA MGTEVVDGCT KPTWKLIDGI
401: CRESLAFETA EKEGIPEMII KRAQELYLSV NATDAQAAVC ATTFECTSSV SDQQLVEEVK SAVTIVCQRK LLDLFKKKSM PELAEVRCFS VGAREQPPPS
501: TVGTSSIYVL IRPDRTLYIG QTDDLVGRLR AHRSKEDMQN APIIYVIVPG KSVANQLETL LINQLPISGF RLVNKADGRH RNFGVAGLIM EALTVRQQD

Best Arabidopsis Sequence Match ( AT3G24320.2 )
(BLAST)

001: MPVVGISRSA RGYCMISIFE TMKAYSLDDG LTEEALVTKL RTRRCHHLFL HASLRHNASG TCRWGEFGEG GLLWGECSSR NFEWFEGDTL SELLSRVKDV
101: YGLDDEVSFR NVNVPSKNRP RPLHLGTATQ IGALPTEGIP CLLKVLLPST CSGLPSLYVR DLLLNPPAYD IALKIQETCK LMSTVTCSIP EFTCVSSAKL
201: VKLLEQREAN YIEFCRIKNV LDDVLHMHRH AELVEILKLL MDPTWVATGL KIDFDTFVNE CHWASDTIGE MISLDENESH QNVSKCDNVP NEFFYDMESS
301: WRGRVKGIHI EEEITQVEKS AEALSLAVAE DFHPIISRIK ATTASLGGPK GEIAYAREHE SVWFKGKRFT PSIWAGTAGE DQIKQLKPAL DSKGKKVGEE
401: WFTTPKVEIA LVRYHEASEN AKARVLELLR ELSVKLQTKI NVLVFASMLL VISKALFSHA CEGRRRKWVF PTLVGFSLDE GAKPLDGASR MKLTGLSPYW
501: FDVSSGTAVH NTVDMQSLFL LTGPNGGGKS SLLRSICAAA LLGISGLMVP AESACIPHFD SIMLHMKSYD SPVDGKSSFQ VEMSEIRSIV SQATSRSLVL
601: IDEICRGTET AKGTCIAGSV VESLDTSGCL GIVSTHLHGI FSLPLTAKNI TYKAMGAENV EGQTKPTWKL TDGVCRESLA FETAKREGVP ESVIQRAEAL
701: YLSVYAKDAS AEVVKPDQII TSSNNDQQIQ KPVSSERSLE KDLAKAIVKI CGKKMIEPEA IECLSIGARE LPPPSTVGSS CVYVMRRPDK RLYIGQTDDL
801: EGRIRAHRAK EGLQGSSFLY LMVQGKSMAC QLETLLINQL HEQGYSLANL ADGKHRNFGT SSSLSTSDVV SIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.