Factsheet for GSMUA_Achr8P12760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090890.1.1	Tomato	extracellular	32.98	43.06
GSMUA_AchrUn_...	Banana	plastid	15.43	7.71
GSMUA_Achr1P01820_001	Banana	plastid	9.57	7.66
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	20.74	3.06
GSMUA_Achr6P13490_001	Banana	cytosol	8.51	2.43
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	14.36	2.42
GSMUA_Achr6P29470_001	Banana	mitochondrion	4.79	2.01
GSMUA_Achr7P04320_001	Banana	plastid	6.38	1.32
GSMUA_Achr1P01780_001	Banana	nucleus	1.06	1.08
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	1.06	0.63
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	1.6	0.5
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.53	0.44
GSMUA_Achr6P29480_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P13480_001	Banana	cytosol	0.0	0.0
GSMUA_Achr8P08020_001	Banana	cytosol	0.0	0.0
GSMUA_Achr8P08030_001	Banana	cytosol	0.0	0.0
GSMUA_Achr1P01790_001	Banana	mitochondrion	0.0	0.0
GSMUA_AchrUn_...	Banana	nucleus	0.0	0.0
CDX95680	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.1170.10	MapMan:35.1	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_N	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983
EnsemblPlantsGene:GSMUA_Achr8G12760_001	EnsemblPlants:GSMUA_Achr8P12760_001	EnsemblPlants:GSMUA_Achr8T12760_001	InterPro:IPR016151	UniProt:M0TPX9	PFAM:PF01624
PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SUPFAM:SSF55271	UniParc:UPI0002963B92	:	:

Description

DNA mismatch repair protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G12760_001]

Coordinates

chr8:+:9499933..9510752

Molecular Weight (calculated)

20978.4 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.003

Length

188 amino acids

Sequence
(BLAST)

001: MELLQFKSRF PREVLLCRVG DFYEAVGFDA CVLVEYAGLN PFGGLRTDSI PRAGCPVMNL RQTLDDLTRN GFSVCIVEEI QGPTQARTRK GRFISGHAHP
101: GNPYVFGLAG VDHDVEFPDP MPVVGISRSA KGYCMISVLE TMKTFSAEDG LTEEAIVTKL RTCHYHHLYL HTSLRHNSSG VIIHFIMF

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.