Factsheet for GSMUA_Achr8P12770_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, nucleus

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08030_001	Banana	cytosol	9.69	7.38
Solyc09g090890.1.1	Tomato	extracellular	3.52	5.56
GSMUA_Achr6P29470_001	Banana	mitochondrion	9.69	4.91
GSMUA_Achr6P13490_001	Banana	cytosol	8.81	3.03
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	11.89	2.42
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	11.01	1.96
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	2.64	1.88
GSMUA_AchrUn_...	Banana	nucleus	5.29	1.73
GSMUA_Achr1P01820_001	Banana	plastid	1.76	1.7
GSMUA_Achr7P04320_001	Banana	plastid	5.73	1.43
GSMUA_Achr1P01780_001	Banana	nucleus	0.88	1.08
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	2.64	1.0
GSMUA_AchrUn_...	Banana	plastid	1.32	0.8
GSMUA_Achr6P29480_001	Banana	cytosol	0.88	0.54
GSMUA_Achr8P12760_001	Banana	cytosol	0.44	0.53
GSMUA_Achr1P01790_001	Banana	mitochondrion	0.44	0.45
GSMUA_Achr8P08020_001	Banana	cytosol	0.88	0.4
GSMUA_Achr6P13480_001	Banana	cytosol	0.0	0.0
CDX95680	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr8P12770_001	EnsemblPlants:GSMUA_Achr8T12770_001	EnsemblPlantsGene:GSMUA_Achr8G12770_001	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	PANTHER:PTHR11361
PANTHER:PTHR11361:SF82	SEG:seg	UniParc:UPI000296B0D9	UniProt:M0TPY0	MapMan:35.1	:

Description

DNA mismatch repair protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G12770_001]

Coordinates

chr8:+:9518182..9529737

Molecular Weight (calculated)

25181.9 Da

IEP (calculated)

6.223

GRAVY (calculated)

0.282

Length

227 amino acids

Sequence
(BLAST)

001: MALILFSAGT CRWGEFGEGG LLWGECNGKT FEWFCGNPIE ELLCKVRGIY GLDQETTFRN VTVSSNKRPQ PLYLGTATQI GVLPTEGIPS LLKVLLPSNC
101: VGLPALFIRD LLLNPPCYEI ASSIQEACRL MSSVTCSIPE FTCVSAAKLV KLLESKEANH IELCRIKNVV DEIIHMSRNP ELSAILHILL QPTWVATGLK
201: VEYDVLVCGC HHCHSYYFLT SVLYQIT

Best Arabidopsis Sequence Match ( AT3G24320.2 )
(BLAST)

001: MPVVGISRSA RGYCMISIFE TMKAYSLDDG LTEEALVTKL RTRRCHHLFL HASLRHNASG TCRWGEFGEG GLLWGECSSR NFEWFEGDTL SELLSRVKDV
101: YGLDDEVSFR NVNVPSKNRP RPLHLGTATQ IGALPTEGIP CLLKVLLPST CSGLPSLYVR DLLLNPPAYD IALKIQETCK LMSTVTCSIP EFTCVSSAKL
201: VKLLEQREAN YIEFCRIKNV LDDVLHMHRH AELVEILKLL MDPTWVATGL KIDFDTFVNE CHWASDTIGE MISLDENESH QNVSKCDNVP NEFFYDMESS
301: WRGRVKGIHI EEEITQVEKS AEALSLAVAE DFHPIISRIK ATTASLGGPK GEIAYAREHE SVWFKGKRFT PSIWAGTAGE DQIKQLKPAL DSKGKKVGEE
401: WFTTPKVEIA LVRYHEASEN AKARVLELLR ELSVKLQTKI NVLVFASMLL VISKALFSHA CEGRRRKWVF PTLVGFSLDE GAKPLDGASR MKLTGLSPYW
501: FDVSSGTAVH NTVDMQSLFL LTGPNGGGKS SLLRSICAAA LLGISGLMVP AESACIPHFD SIMLHMKSYD SPVDGKSSFQ VEMSEIRSIV SQATSRSLVL
601: IDEICRGTET AKGTCIAGSV VESLDTSGCL GIVSTHLHGI FSLPLTAKNI TYKAMGAENV EGQTKPTWKL TDGVCRESLA FETAKREGVP ESVIQRAEAL
701: YLSVYAKDAS AEVVKPDQII TSSNNDQQIQ KPVSSERSLE KDLAKAIVKI CGKKMIEPEA IECLSIGARE LPPPSTVGSS CVYVMRRPDK RLYIGQTDDL
801: EGRIRAHRAK EGLQGSSFLY LMVQGKSMAC QLETLLINQL HEQGYSLANL ADGKHRNFGT SSSLSTSDVV SIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.