Factsheet for GSMUA_Achr6P29480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G328200.1	Wheat	cytosol	78.17	54.72
Zm00001d000329_P002	Maize	cytosol	67.12	54.49
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	70.08	50.88
HORVU1Hr1G066830.9	Barley	cytosol	77.36	45.41
OQU78247	Sorghum	cytosol	77.09	36.43
TraesCS1D01G316200.1	Wheat	cytosol	78.17	35.5
TraesCS1A01G315900.1	Wheat	cytosol	77.9	35.33
Os05t0498300-01	Rice	cytosol	76.55	35.11
VIT_19s0090g00670.t01	Wine grape	cytosol	74.66	34.93
AT3G20475.1	Thale cress	cytosol	70.89	32.59
CDY65220	Canola	cytosol	69.0	31.92
KRH14375	Soybean	cytosol	68.46	31.28
KRH73763	Soybean	cytosol	68.19	31.23
CDY19637	Canola	cytosol	69.0	30.08
Bra035777.1-P	Field mustard	cytosol	67.66	29.7
GSMUA_Achr6P13480_001	Banana	cytosol	11.86	17.12
GSMUA_Achr8P08020_001	Banana	cytosol	22.1	16.6
GSMUA_Achr1P01790_001	Banana	mitochondrion	9.7	16.14
GSMUA_AchrUn_...	Banana	nucleus	25.61	13.73
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	9.97	11.6
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	17.52	10.85
GSMUA_Achr1P01780_001	Banana	nucleus	4.31	8.65
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	25.34	7.37
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	20.22	6.73
GSMUA_Achr7P04320_001	Banana	plastid	15.63	6.37
GSMUA_Achr6P13490_001	Banana	cytosol	11.32	6.37
GSMUA_Achr6P29470_001	Banana	mitochondrion	1.35	1.12
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.54	0.88
GSMUA_Achr1P01820_001	Banana	plastid	0.54	0.85
GSMUA_Achr8P08030_001	Banana	cytosol	0.54	0.67
Solyc10g018540.1.1	Tomato	cytosol	0.54	0.58
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0
GSMUA_Achr8P12760_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	EnsemblPlantsGene:GSMUA_Achr6G29480_001	EnsemblPlants:GSMUA_Achr6P29480_001	EnsemblPlants:GSMUA_Achr6T29480_001	UniProt:M0TB93	InterPro:P-loop_NTPase
PFAM:PF00488	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00534	SUPFAM:SSF48334
SUPFAM:SSF52540	UniParc:UPI000295C1ED	:	:	:	:

Description

Putative MutS protein homolog 5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29480_001]

Coordinates

chr6:+:29713553..29722388

Molecular Weight (calculated)

41826.6 Da

IEP (calculated)

5.507

GRAVY (calculated)

-0.005

Length

371 amino acids

Sequence
(BLAST)

001: MVYERLPDFL EQVSAYENAS VPVQHGWKKA PSIVYVHQIG YLMCIFDEKL SDETLGKLHD FELAFSEDGD EKRFFYHTPK TRELDNLLGD IYHKILDMER
101: AIIRDLITRV LNFVPQLIKA VNFAAELDCI LSLALIAHQN NYVRPILTED TFLDIKNGRH ALQEMTVDTF VPNDTKILDD GRINIITGPN YSGKSIYVKQ
201: VALVVYLSHI GSFIPADSAT IGITDRIFCA MGNKPMTTEQ STFMIDLHQV GMMLRQATSH SLCLMDEFGK GTLTEDGIGL LGGAINHFAN YEHPPKVLLC
301: THLTEIFDKD CLPQSENIKF YTMSVLKTDN NCTSTEDIIF LYRLVPGQAP LSYGLHCARL AGMLQGTLHI L

Best Arabidopsis Sequence Match ( AT3G20475.2 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGTFRKITN IFNELNTIFD GSIYDCGL

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.