Factsheet for GSMUA_AchrUn_randomP05190_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P12760_001	Banana	cytosol	7.71	15.43
GSMUA_Achr1P01820_001	Banana	plastid	6.38	10.21
GSMUA_Achr6P13490_001	Banana	cytosol	14.1	8.04
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	22.87	6.75
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	19.41	6.55
GSMUA_Achr6P29470_001	Banana	mitochondrion	6.65	5.58
GSMUA_Achr8P08030_001	Banana	cytosol	2.39	3.02
GSMUA_Achr7P04320_001	Banana	plastid	4.79	1.98
GSMUA_AchrUn_...	Banana	nucleus	2.66	1.45
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.8	1.32
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	1.06	1.25
GSMUA_Achr1P01780_001	Banana	nucleus	0.53	1.08
GSMUA_Achr8P08020_001	Banana	cytosol	1.06	0.81
GSMUA_Achr1P01790_001	Banana	mitochondrion	0.27	0.45
GSMUA_Achr6P29480_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P13480_001	Banana	cytosol	0.0	0.0
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	0.0	0.0
CDX86902	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.420.110	Gene3D:3.40.1170.10	MapMan:35.1	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mmatch_repair_MutS_con_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSMUA_AchrUn_randomG05190_001	EnsemblPlants:GSMUA_AchrUn_randomP05190_001	EnsemblPlants:GSMUA_AchrUn_randomT05190_001	InterPro:IPR016151
InterPro:IPR036678	UniProt:M0U6I1	InterPro:MutS_con_dom_sf	PFAM:PF01624	PFAM:PF05188	PANTHER:PTHR11361
PANTHER:PTHR11361:SF122	SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI00029574CF	SEG:seg	:

Description

DNA mismatch repair protein Msh3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05190_001]

Coordinates

chrchrUn_random:+:20581430..20583333

Molecular Weight (calculated)

40297.1 Da

IEP (calculated)

9.524

GRAVY (calculated)

-0.143

Length

376 amino acids

Sequence
(BLAST)

001: MGKPKQQTIS RFFAPKPPQI PSSASPPSQP KPSPRISATV SFSPSAKRRL QTLTPSPPPK PKKSTPPSPQ SPAAIPPSNP FLHRRFLSKL LDLSSPSSSS
101: SSSSSSAAAA KPLPQNPAYT PLEQQVLDLK TKYPDVLLMI EVGYKYRFFG EDAEIAARVL GIFAHVDRNF LTASIPTFRL HFHVRRLVAA GYKVGVVKQT
201: ETAAIKAHGS NRLGPFSRGL SALYTRSTIE AAEDMGGARD EGVSISGSNY LACVVEKELV PGSVHLEGRF AVRIGIIAVE VSTGDVVHGE FNDDSIRTGL
301: EAVLISVSPA EILLGEPLSA TTEKLLLAYA GPTSNVRVER ASRDCYSDGG ALAEVISLYE ITDDNVLAAF IKYLES

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.