Factsheet for GSMUA_Achr1P01810_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0509000-01	Rice	cytosol, nucleus	40.13	23.62
OQU91528	Sorghum	plastid	59.25	22.74
TraesCS1D01G178000.1	Wheat	plastid	57.05	21.88
TraesCS1B01G200700.1	Wheat	plastid	56.74	21.86
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	36.99	21.81
TraesCS1A01G179700.1	Wheat	plastid	56.74	21.75
Zm00001d013887_P002	Maize	plastid	56.74	21.22
HORVU1Hr1G047640.7	Barley	plastid	56.43	20.62
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	47.34	18.46
KRH72584	Soybean	plastid	42.63	17.22
Solyc03g080010.2.1	Tomato	plastid	42.01	16.22
CDY41773	Canola	plastid	39.81	15.86
AT5G54090.1	Thale cress	plastid	39.5	15.83
Bra022693.1-P	Field mustard	plastid	39.5	15.71
CDY28796	Canola	plastid	39.19	15.59
GSMUA_Achr1P01790_001	Banana	mitochondrion	7.52	10.76
GSMUA_Achr6P29480_001	Banana	cytosol	11.6	9.97
GSMUA_Achr7P04320_001	Banana	plastid	20.38	7.14
GSMUA_Achr8P08020_001	Banana	cytosol	10.97	7.09
GSMUA_AchrUn_...	Banana	nucleus	14.42	6.65
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	10.97	5.84
GSMUA_Achr6P13490_001	Banana	cytosol	11.6	5.61
GSMUA_Achr1P01780_001	Banana	nucleus	2.51	4.32
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	15.05	4.31
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	16.61	4.16
GSMUA_Achr6P13480_001	Banana	cytosol	2.51	3.11
GSMUA_Achr8P08030_001	Banana	cytosol	2.51	2.68
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	1.88	2.64
GSMUA_Achr6P29470_001	Banana	mitochondrion	1.57	1.12
GSMUA_AchrUn_...	Banana	plastid	1.25	1.06
GSMUA_Achr8P12760_001	Banana	cytosol	0.63	1.06
GSMUA_Achr1P01820_001	Banana	plastid	0.63	0.85
KRH16964	Soybean	cytosol, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P01810_001	EnsemblPlants:GSMUA_Achr1T01810_001	EnsemblPlantsGene:GSMUA_Achr1G01810_001	Gene3D:3.40.50.300	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF48334	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296583B
UniProt:M0RW89	MapMan:35.2	:	:	:	:

Description

Putative MutS2 protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G01810_001]

Coordinates

chr1:-:1487729..1493377

Molecular Weight (calculated)

35638.8 Da

IEP (calculated)

7.178

GRAVY (calculated)

0.064

Length

319 amino acids

Sequence
(BLAST)

001: MLLFLIVLQL YQLMDKLLGQ EKNETSTLEM CIVNGRCCIK VMTDRSTIFD GLLLSSGSRA GSILEPIAAV PLNDELQRAR ALVIKAEEEV LSKLADKMLA
101: EIDDIQNLLQ IIIRLDVITA RAKYSLAYDG TFPDIYMPNH IGGEPSDSLS QGATTSSASS HPSRRNWKLY MPKSYHPLLL KRHLEDLHNA KKDVVDATAE
201: IRRNLLGKHI EGNDGDARLA SMKLRVSELE KNYPVPVDLM ITENTNVLVI TGPNTGGKTI SLKTVGLASL MTKTGLYIVM LYYIIFSCQL FLLSAGIVFV
301: QMKFNILDNQ HPMYFNLFT

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.