CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72584	Soybean	plastid	86.51	59.24
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	63.03	41.69
GSMUA_Achr1P01790_001	Banana	mitochondrion	16.82	40.81
GSMUA_Achr1P01820_001	Banana	plastid	16.64	38.3
AT5G54090.1	Thale cress	plastid	55.64	37.81
Solyc03g080010.2.1	Tomato	plastid	56.93	37.29
CDY28796	Canola	plastid	55.27	37.28
Bra022693.1-P	Field mustard	plastid	55.08	37.16
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	21.81	36.99
CDY41773	Canola	plastid	54.71	36.95
OQU91528	Sorghum	plastid	49.72	32.37
TraesCS1B01G200700.1	Wheat	plastid	48.61	31.76
TraesCS1A01G179700.1	Wheat	plastid	48.8	31.73
TraesCS1D01G178000.1	Wheat	plastid	48.61	31.61
HORVU1Hr1G047640.7	Barley	plastid	48.43	30.01
Os10t0509000-01	Rice	cytosol, nucleus	29.94	29.89
Zm00001d013887_P002	Maize	plastid	43.07	27.32
KRH50031	Soybean	plastid	27.91	16.52
KRH35336	Soybean	cytosol	10.72	13.65
KRH20465	Soybean	cytosol	4.25	11.33
KRG91481	Soybean	plastid	16.27	8.22
KRH03809	Soybean	nucleus	13.86	7.96
KRG96523	Soybean	plastid	18.48	7.86
KRH14375	Soybean	cytosol	11.65	7.76
KRG90177	Soybean	cytosol	9.61	7.72
KRH73763	Soybean	cytosol	11.46	7.65
KRH28123	Soybean	cytosol	10.35	7.05
KRH39265	Soybean	mitochondrion	13.68	6.86
KRH48416	Soybean	cytosol	14.23	6.82
KRH33548	Soybean	nucleus	13.86	6.64
KRH33415	Soybean	cytosol, extracellular, plastid	1.29	5.69
KRG90178	Soybean	mitochondrion	3.7	4.46
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.92	4.13
KRG88725	Soybean	nucleus	1.85	3.51
KRH16964	Soybean	cytosol, nucleus	0.74	2.41

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	UniProt:A0A0R0GPT1	EMBL:ACUP02009036	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C
EnsemblPlantsGene:GLYMA_14G188900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	EnsemblPlants:KRH16965
ProteinID:KRH16965	ProteinID:KRH16965.1	InterPro:P-loop_NTPase	PFAM:PF00488	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81
SMART:SM00534	SUPFAM:SSF52540	UniParc:UPI0006ED5422	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:45348073..45353965

Molecular Weight (calculated)

59739.0 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.045

Length

541 amino acids

Sequence
(BLAST)

001: MQRQRQRVSL SLSASIHHDS LRVLEWDKLC DLVASFACTS LGRQALKDQL WSLNQTFEES LALLEETNAA VEMNKHGSLR LHLGHLDAML VKTAIQQARR
101: SIPVSGYEAW AIVALLQCAE TLPGDLKAAI KEDKDWHNRF MPLTEVIMEF VINRSLIKAI EQVVDEDGSI KDSAYIAFNE REYFRDVSLL SCCHTADCYR
201: LVLVGIFLLC VRVDSGQKTS IKGLLLSSGS GVGSTIEPLS AVPLNDELQR ARSLVVKAEA DVLLTLTKKM QLDLEDIENT LNSLVELDVI NARATYGLSF
301: GWSSPHIFLP DRGSSSTAEA FLPRKENPYG PLPSKREWML YLLKAYPPLL LQRHKEKLRK AKKDVNIAAS NAALDNAQPV PVDFSVSQKT RVIVITGPNT
401: GSKTICLKTV GLAAMMAKSG LYVLASESAQ IPWFDFVFAD IGDEQSLSQS LSTFSGHLKQ ISVGGGTNPL EGAALGMALL KSFAQDICLL TMATTHHDEL
501: KTLKYSDEAF ENACMEFDEV NLKPTYKFLW GVPGKNSLTA E

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.