CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20465	Soybean	cytosol	19.04	85.71
PGSC0003DMT400057653	Potato	plastid	46.72	61.71
Solyc02g078390.2.1	Tomato	plastid	59.74	60.2
AT1G65070.2	Thale cress	plastid	51.31	53.54
GSMUA_Achr7P04320_001	Banana	plastid	52.3	52.53
Bra022497.1-P	Field mustard	plastid	50.88	52.48
CDX91525	Canola	plastid	50.88	52.42
CDY16386	Canola	plastid	51.09	39.54
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	16.52	27.91
KRH72584	Soybean	plastid	22.76	26.33
KRH16964	Soybean	cytosol, nucleus	3.39	18.67
KRH35336	Soybean	cytosol	7.88	16.94
KRG90177	Soybean	cytosol	9.74	13.2
KRH14375	Soybean	cytosol	10.18	11.45
KRH73763	Soybean	cytosol	9.96	11.23
KRH03809	Soybean	nucleus	11.05	10.72
KRH28123	Soybean	cytosol	9.3	10.71
KRH33548	Soybean	nucleus	12.14	9.82
KRG91481	Soybean	plastid	10.94	9.35
KRG96523	Soybean	plastid	12.91	9.27
KRH39265	Soybean	mitochondrion	10.83	9.18
KRH48416	Soybean	cytosol	11.05	8.95
KRH33415	Soybean	cytosol, extracellular, plastid	1.2	8.94
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.98	7.44
KRG90178	Soybean	mitochondrion	2.52	5.13
KRG88725	Soybean	nucleus	1.42	4.56

Protein Annotations

EntrezGene:100778373	Gene3D:3.30.1370.110	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004653	ncoils:Coil
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	EnsemblPlantsGene:GLYMA_07G195700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030983	GO:GO:0032300	GO:GO:0045910
GO:GO:0090305	UniProt:I1KLI9	InterPro:IPR002625	EnsemblPlants:KRH50031	ProteinID:KRH50031	ProteinID:KRH50031.1
InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01713	PIRSF:PIRSF005814	PFscan:PS50828
PANTHER:PTHR11361	PANTHER:PTHR11361:SF14	SMART:SM00463	SMART:SM00533	SMART:SM00534	SUPFAM:SSF160443
SUPFAM:SSF48334	SUPFAM:SSF52540	InterPro:Smr_dom	InterPro:Smr_dom_sf	UniParc:UPI0002338064	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:36428415..36433987

Molecular Weight (calculated)

100967.0 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.300

Length

914 amino acids

Sequence
(BLAST)

001: MQLSSNVLIP ANKPPRPLFF KPRFCSNPNS PESNSLQAET LKTLEWGSVC KQLSAFTSTS MGSAAALNAR LPIGRTRRDS QRLLDQTSAA RLVAEPLDFS
101: GVHDLTEILG VATSGHLLTI RELCTVRHTL AAARELFDAL KRVASASNHP QRYLPLLDIL QNCNFQVGLE RKIEFCIDCK LSIILDRASE DLEIIRSERK
201: RNIEILDSLL KEVSSQIFQA GGIDRPLIVK RRSRMCVGIR ASHRYLLPDG VVLNVSSSGA TYFMEPKDAI DLNNLEVRLS SSEKAEESVI LSMLASEIAN
301: SESDINHLLD KILKVDLAFA RAAYAQWMNG VCPIFSLGNF EGRDSVEDDD DTLVTQEDDD LTVDIVGIRH PLLLESSLEN ISDNLTLRSG NAAEFGNGNG
401: TMASKYMPQG ISDFPVPVDF KIGHGTRVVV ISGPNTGGKT ASMKTLGLAS LMSKAGMHLP AKKNPKLPWF DLILADIGDH QSLEQNLSTF SGHISRICKI
501: LEVASTQSLV LIDEIGGGTD PSEGVALSAS ILQYLKDRVN LAVVTTHYAD LSSMKEKDTR FDNAAMEFSL ETLQPTYRIL WGCTGDSNAL SIAQSIGFDR
601: NIIDRAQKWV EKFKPEQQQE RRGMLYQSLQ EERNQLKAQA EKAASVHAEI MSVYNEIQGE AEDLDQREME LMAKETQQVQ HELEHAKSQI ETVIQKFEKQ
701: LRISGRDQLN YLIRESESAI ASIVKAHTPA DSFPINEADR ALYTPQIGEQ VHVKGLGGKL ATVVESPGDD GTIMVQYGKV KVRVKKSNII AIPSSRKNAV
801: TSSSSTHQGR QSLRNGEYRD NVDNKTNDDI SYGPVVRTSK NTVDLRGMRV EEASIQLEMA INASRPYSVL FVIHGMGTGA VKERALQILQ NHPRVTNFEP
901: ESPMNYGSTI AYVK

Best Arabidopsis Sequence Match ( AT1G65070.2 )
(BLAST)

001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRY EQANPMNHGC TVAYIK

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.