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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022497.1-P Field mustard plastid 82.19 81.26
CDX91525 Canola plastid 82.19 81.17
CDY16386 Canola plastid 81.39 60.37
PGSC0003DMT400057653 Potato plastid 41.9 53.03
KRH50031 Soybean plastid 53.54 51.31
KRH20465 Soybean cytosol 11.87 51.23
Solyc02g078390.2.1 Tomato plastid 52.51 50.72
GSMUA_Achr7P04320_001 Banana plastid 48.29 46.48
TraesCS2D01G565200.1 Wheat plastid 48.29 46.13
EES11666 Sorghum plastid 47.95 46.05
TraesCS2B01G595200.1 Wheat endoplasmic reticulum, plastid, vacuole 48.06 45.86
Zm00001d001806_P001 Maize plastid 47.15 45.84
TraesCS2A01G588000.2 Wheat plastid 47.6 45.52
HORVU2Hr1G118740.5 Barley plastid 44.18 44.33
Os04t0680700-01 Rice plastid 23.63 41.65
AT5G54090.1 Thale cress plastid 23.86 26.26
AT3G18524.1 Thale cress nucleus 12.21 11.42
AT4G17380.1 Thale cress cytosol, nucleus, plasma membrane 9.7 10.73
AT3G24320.1 Thale cress mitochondrion 13.24 10.38
AT3G20475.1 Thale cress cytosol 9.36 10.16
AT3G24495.1 Thale cress mitochondrion 12.44 9.83
AT4G25540.1 Thale cress nucleus, plastid 11.76 9.53
AT4G02070.1 Thale cress plastid 13.81 9.14
Protein Annotations
Gene3D:3.30.1370.110Gene3D:3.40.50.300MapMan:35.2EntrezGene:842815UniProt:A0A178WFQ3ProteinID:AAF06041.1
ProteinID:AEE34326.1ArrayExpress:AT1G65070EnsemblPlantsGene:AT1G65070RefSeq:AT1G65070TAIR:AT1G65070RefSeq:AT1G65070-TAIR-G
EnsemblPlants:AT1G65070.2TAIR:AT1G65070.2ncoils:CoilInterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824
GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006298GO:GO:0006950
GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0016887
GO:GO:0030983GO:GO:0032300GO:GO:0045910GO:GO:0090305InterPro:IPR002625InterPro:MutS2
RefSeq:NP_001185315.1ProteinID:OAP17197.1InterPro:P-loop_NTPasePFAM:PF00488PFAM:PF01713PIRSF:PIRSF005814
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
ScanProsite:PS00486PFscan:PS50828PANTHER:PTHR11361PANTHER:PTHR11361:SF14UniProt:Q9SS53SMART:SM00463
SMART:SM00533SMART:SM00534SUPFAM:SSF160443SUPFAM:SSF48334SUPFAM:SSF52540InterPro:Smr_dom
InterPro:Smr_dom_sfUniParc:UPI00000AB1B8SEG:seg:::
Description
DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
Coordinates
chr1:-:24172577..24176356
Molecular Weight (calculated)
96926.7 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.265
Length
876 amino acids
Sequence
(BLAST)
001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRY EQANPMNHGC TVAYIK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.