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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d001806_P001 Maize plastid 91.34 92.45
TraesCS2D01G565200.1 Wheat plastid 75.33 74.92
TraesCS2A01G588000.2 Wheat plastid 75.11 74.78
TraesCS2B01G595200.1 Wheat endoplasmic reticulum, plastid, vacuole 74.56 74.07
HORVU2Hr1G118740.5 Barley plastid 66.78 69.76
Os04t0680700-01 Rice plastid 37.39 68.61
GSMUA_Achr7P04320_001 Banana plastid 56.69 56.81
Solyc02g078390.2.1 Tomato plastid 50.88 51.16
CDX91525 Canola plastid 46.82 48.14
AT1G65070.2 Thale cress plastid 46.05 47.95
Bra022497.1-P Field mustard plastid 46.49 47.86
CDY16386 Canola plastid 46.6 35.99
OQU91528 Sorghum plastid 24.34 26.71
PGSC0003DMT400001555 Potato cytosol 3.4 15.74
EER99382 Sorghum cytosol 10.31 11.71
OQU78247 Sorghum cytosol 9.65 11.21
KXG26672 Sorghum mitochondrion, nucleus 13.05 10.52
EER99643 Sorghum nucleus 10.53 10.19
EES11671 Sorghum plastid 11.4 9.45
KXG35601 Sorghum mitochondrion, nucleus, plastid 12.94 9.05
KXG31683 Sorghum mitochondrion, nucleus 10.96 8.12
KRH33415 Soybean cytosol, extracellular, plastid 0.88 6.5
KRG88725 Soybean nucleus 1.21 3.86
EES13125 Sorghum cytosol 0.0 0.0
Protein Annotations
Gene3D:3.30.1370.110Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseUniProt:C5YAL7ncoils:Coil
InterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfEnsemblPlants:EES11666ProteinID:EES11666ProteinID:EES11666.1
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824
GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006298GO:GO:0006950
GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0016887
GO:GO:0030983GO:GO:0032300GO:GO:0045910GO:GO:0090305InterPro:IPR002625InterPro:MutS2
InterPro:P-loop_NTPasePFAM:PF00488PFAM:PF01713PIRSF:PIRSF005814ScanProsite:PS00486PFscan:PS50828
PANTHER:PTHR11361PANTHER:PTHR11361:SF14SMART:SM00382SMART:SM00463SMART:SM00533SMART:SM00534
EnsemblPlantsGene:SORBI_3006G270200SUPFAM:SSF160443SUPFAM:SSF48334SUPFAM:SSF52540unigene:Sbi.5012InterPro:Smr_dom
InterPro:Smr_dom_sfUniParc:UPI0001A8701BRefSeq:XP_002447338.1SEG:seg::
Description
hypothetical protein
Coordinates
chr6:+:60251461..60255837
Molecular Weight (calculated)
100161.0 Da
IEP (calculated)
7.831
GRAVY (calculated)
-0.267
Length
912 amino acids
Sequence
(BLAST)
001: MAATGKLTLL LPVTLSSRSS HCTRGFMQSP RRQLPQRLTV TAAATETSSY NLPSRSSPET PEARQIRLET ESALEWGGVC ERLAHFASTA AGRAACEGRR
101: VPVGRSREES ERFIDQTAAA VLLPTPLDFG GVEDVSALVA AAASGRALAV RELCAVGRSI RAVRAVFDQL KRLADEMPDG RYSSLVDILQ GCDFLTELVQ
201: RIEFCLDSTL SLVLDRASKK LEIIRRERRR NIEMLESLLK DTAAKIFQAG GIDSPLVTKR RSRMCVGVKA SHKHLVPGGI VLSSSGSGAT YFVEPRDAVE
301: LNNREVKLSG DERAEELAIL SLLTSMIADS QLKIRNLMDK VLELDLACAR GSYARWTNGV KPTFSDSYTI SQSDQCTDYS VYIEGIRHPL LLEQSLMAEE
401: STTRASEMPV PLDMWVKKHA RIVVISGPNT GGKTATMKTL GLSSLMSKAG MFFPAKGSPR IPWFDQVLAD IGDHQSLEHS LSTFSGHISR LRKIVEIVSK
501: DSLVLIDEIG SGTDPSEGVA LSTSILKYLA SKVNLAIVTT HYADLSRLQS VDNRFENAAM EFCVETLQPT YRILWGSTGN SNALSIAKSI GFDQKVLDRA
601: QEWVEKLLPD KQKERQGLLY DSLLDEKKLL ESQANEAASV LSQVEGLYNE IRLEADDLES RVAGLRARET QKVQQELKVV KSQMDTIIKN FEAQLKNSKL
701: EQYNSLMRKA EAATASVVAA HQPNEITFDD DENQSSFVPQ IGDKVYIQGL GGGTMATVVE TFGEDESCMV QYGKIKVRVK RNKIKLVQRG INNEATTSSS
801: VKAKGRTPKQ RSATTAEADR NQDGGGSISF GPVVQTSKNT VDLRGKRVSE AAYELQMAID ACRTYQVLFV VHGMGTGAVK ERAIDVLRNH PRVAKFEDES
901: PLNYGCTVAY IQ
Best Arabidopsis Sequence Match ( AT1G65070.2 )
(BLAST)
001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRY EQANPMNHGC TVAYIK
Arabidopsis Description
DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.