CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000329_P002	Maize	cytosol	52.74	90.59
HORVU1Hr1G066830.9	Barley	cytosol	71.34	88.61
Os05t0498300-01	Rice	cytosol	89.04	86.4
TraesCS1D01G316200.1	Wheat	cytosol	89.55	86.05
TraesCS1A01G315900.1	Wheat	cytosol	89.04	85.45
TraesCS1B01G328200.1	Wheat	cytosol	57.2	84.72
GSMUA_Achr6P29480_001	Banana	cytosol	36.43	77.09
VIT_19s0090g00670.t01	Wine grape	cytosol	69.55	68.85
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	43.06	66.14
AT3G20475.1	Thale cress	cytosol	66.75	64.93
KRH73763	Soybean	cytosol	66.24	64.2
CDY65220	Canola	cytosol	65.1	63.72
KRH14375	Soybean	cytosol	65.86	63.67
GSMUA_Achr6P29470_001	Banana	mitochondrion	35.29	61.83
CDY19637	Canola	cytosol	63.95	58.99
Bra035777.1-P	Field mustard	cytosol	63.44	58.93
Solyc10g018540.1.1	Tomato	cytosol	24.97	57.14
EER99382	Sorghum	cytosol	18.73	18.31
EER99643	Sorghum	nucleus	20.38	16.99
EES11671	Sorghum	plastid	20.76	14.82
KXG35601	Sorghum	mitochondrion, nucleus, plastid	21.53	12.96
KXG31683	Sorghum	mitochondrion, nucleus	17.71	11.29
OQU91528	Sorghum	plastid	10.57	9.99
EES11666	Sorghum	plastid	11.21	9.65
KXG26672	Sorghum	mitochondrion, nucleus	13.38	9.28
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	UniProt:A0A1Z5R3D0	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0000712	GO:GO:0000794
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010777	GO:GO:0016043	GO:GO:0030983	GO:GO:0043073	GO:GO:0045143	GO:GO:0051026
EnsemblPlants:OQU78247	ProteinID:OQU78247	ProteinID:OQU78247.1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05192
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534
EnsemblPlantsGene:SORBI_3009G185700	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI000B8BAF42	:	:

Description

hypothetical protein

Coordinates

chr9:+:53875160..53887681

Molecular Weight (calculated)

88030.3 Da

IEP (calculated)

5.037

GRAVY (calculated)

0.006

Length

785 amino acids

Sequence
(BLAST)

001: MACVMQGRRV GVAYYDSDTR QLFVLEIWED SVGEYPLIDL VKFQSKPSTI YASTKTEEAL LSALQRNDGN NEAPVVKLMK SSTFSYEQAW HRLIYLKVAA
101: MDDGLSAKER ICFLNSMMDL GSDVQVRAAG GLLAILDNER LLDTIEQMQG GASIAIDSVF LKLDATAHEA LQIFQVDKHP SYMGIGRAKE GFSVFGMLNK
201: CVTPMGKRLL RAWFLRPIID IDVINNRLNT ITFFLCCEEV MSALRETLKS VRDVPHMLQK FNSPSSFCTS SDWTTFLKCI CSLLHINKIF EVGISEHLAI
301: KLQHMNIDLI GKANSSITAE LDYVSDLVVG VIDVQRGKEK GYETVVKEGL CDELDELRMV YEGLPDFLEQ VSDNENASLP FSFGCRIAPL VVYVHQIGYL
401: MCFFDEKISD ALLAGLPDYE FAFSDEGEER RFFYHTQKTR ELDNLLGDIY HKILDMERAI IRDLVCRVLQ FLPQLTKAVN FAAELDCILS LAIVARQNNY
501: VRPILTEDSI LEIHNGRHAL QEMTVDTFVP NDIKIRDAGR INIITGPNYS GKSIYIKQVA LIVFLAHIGS FVPADSAIVG LTDRIFCAMG SKSMTTEQST
601: FMIDLHQVGT MLRHATSRSL CLLDEFGKGT LTEDGIGLLG GTISHFANYD PPPKVLLSTH LTEIFTENYL PQSEHIKCYT MSVLNPDGQT SNEDIIFLYR
701: LVPGQALLSF GLHCAWLAGV PNEVVQRADS VLGDIHSKKP ARRVTSEKLT ATDKQYQDAV TKLMAIDTQK DDLNSFFQEL FPSEL

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.