CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013887_P002	Maize	plastid	89.41	87.1
Os10t0509000-01	Rice	cytosol, nucleus	53.79	82.47
TraesCS1B01G200700.1	Wheat	plastid	77.74	78.02
TraesCS1D01G178000.1	Wheat	plastid	78.1	78.0
TraesCS1A01G179700.1	Wheat	plastid	78.1	78.0
HORVU1Hr1G047640.7	Barley	plastid	77.38	73.65
GSMUA_Achr1P01790_001	Banana	mitochondrion	18.53	69.06
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	22.74	59.25
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	49.46	50.24
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	32.37	49.72
KRH72584	Soybean	plastid	46.69	49.11
AT5G54090.1	Thale cress	plastid	46.45	48.49
Solyc03g080010.2.1	Tomato	plastid	47.77	48.06
CDY41773	Canola	plastid	45.97	47.69
CDY28796	Canola	plastid	45.73	47.38
Bra022693.1-P	Field mustard	plastid	45.61	47.26
GSMUA_Achr1P01820_001	Banana	plastid	11.91	42.13
KRH16964	Soybean	cytosol, nucleus	7.1	35.54
EES11666	Sorghum	plastid	26.71	24.34
EER99382	Sorghum	cytosol	11.31	11.71
OQU78247	Sorghum	cytosol	9.99	10.57
EER99643	Sorghum	nucleus	11.43	10.08
KXG26672	Sorghum	mitochondrion, nucleus	13.48	9.9
EES11671	Sorghum	plastid	11.31	8.55
KXG35601	Sorghum	mitochondrion, nucleus, plastid	12.15	7.75
KXG31683	Sorghum	mitochondrion, nucleus	11.19	7.55
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8065183	UniProt:C5WWA7	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_sf	ProteinID:EER93963.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0016887	GO:GO:0030983	GO:GO:0032300	GO:GO:0045910	GO:GO:0090305	InterPro:MutS2
EnsemblPlants:OQU91528	ProteinID:OQU91528	ProteinID:OQU91528.1	InterPro:P-loop_NTPase	PFAM:PF00488	PIRSF:PIRSF005814
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00534	EnsemblPlantsGene:SORBI_3001G198400	SUPFAM:SSF48334
SUPFAM:SSF52540	UniParc:UPI0001A82779	RefSeq:XP_002466965.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:17910531..17931830

Molecular Weight (calculated)

91267.7 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.192

Length

831 amino acids

Sequence
(BLAST)

001: MLRLSIAALT SPLLPTSVPA VRPHPRRLLR LRVRSLAAAS SLSPSARSLR LLEWGKVCDA VASFAGTAHG RDATKKQLWE VEDVSYEQSQ RLLQETEAAV
101: WLLDNAGGAM DFSGLDTVAI ESAIHCVSGG AVIKGLEAMA VASLMLFVES LQVNIKAAIK LDEGSRSRLT TLTETILDAV INKSLVKSIQ DIIDDDGSVK
201: DTASPELRRY RDQVQRLESR LYQLMDKLMR NADDEASLSE VCIVNGRCCI RTTTDNSSIF DGLLLSSGSG AGSMIEPIAA IPLNDELQES RALVAKAELD
301: VLSKLTDKIL LDLDSIQNLL QETIKLDKIA ARAKYSIAYD GTFPDLYLPN FENETVTSAT CGSVEQISSA QLPKKAWKLY MPNAYHPLLL QRHQENIHRA
401: KRDVASATAE IRRRRIYGQD IAEDQLASDL DSMKLRVSQL EKDQPVPVDF MVAEETTVLV ITGPNTGGKT ISLKTVGLAS LMAKIGLYIL ASEPVKIPWF
501: NAVYADIGDE QSLTQSLSTF SGHLKQIGAI RAESTSESLV LLDEVGAGTN PLEGAALGMS LLESFADAGS FLTLATTHHG ELKTLKYSNN SFENACMEFD
601: EENLKPTFKI LWGIPGRSNA INIAERLGLP LDIVESSRHL LGTAGAEINA LIMDMERFKQ EYQQHLQEAQ YLLMQSKELH NNLELAQKNI VDHTSAQRKR
701: KARVISEYAV MARSIIRKKF QQLQESAIAE RLKEEKAVND AKSDTVKDHV LANTSAIGKT QNIDTNLGMA TNDDEGGVPE VGDSVYVPKL KNEATVVKID
801: LSKDEVQVQA GMMKLKLKLK DVKVQKRKVS R

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.