CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16964	Soybean	cytosol, nucleus	19.24	91.57
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	59.24	86.51
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	64.68	62.47
GSMUA_Achr1P01790_001	Banana	mitochondrion	17.22	60.99
AT5G54090.1	Thale cress	plastid	54.3	53.89
CDY28796	Canola	plastid	54.68	53.87
Solyc03g080010.2.1	Tomato	plastid	56.2	53.75
Bra022693.1-P	Field mustard	plastid	54.56	53.74
CDY41773	Canola	plastid	54.05	53.31
Os10t0509000-01	Rice	cytosol, nucleus	33.67	49.08
TraesCS1B01G200700.1	Wheat	plastid	49.87	47.58
TraesCS1A01G179700.1	Wheat	plastid	49.75	47.24
TraesCS1D01G178000.1	Wheat	plastid	49.37	46.88
OQU91528	Sorghum	plastid	49.11	46.69
HORVU1Hr1G047640.7	Barley	plastid	49.49	44.79
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	17.22	42.63
GSMUA_Achr1P01820_001	Banana	plastid	12.66	42.55
Zm00001d013887_P002	Maize	plastid	44.68	41.38
KRH50031	Soybean	plastid	26.33	22.76
KRH20465	Soybean	cytosol	5.06	19.7
KRH35336	Soybean	cytosol	10.0	18.59
KRG90177	Soybean	cytosol	11.14	13.06
KRH03809	Soybean	nucleus	13.42	11.25
KRH28123	Soybean	cytosol	11.01	10.96
KRG91481	Soybean	plastid	14.81	10.93
KRH73763	Soybean	cytosol	11.01	10.74
KRH14375	Soybean	cytosol	11.01	10.71
KRG96523	Soybean	plastid	16.58	10.29
KRH33548	Soybean	nucleus	14.43	10.09
KRH48416	Soybean	cytosol	13.04	9.12
KRH39265	Soybean	mitochondrion	12.41	9.08
KRH33415	Soybean	cytosol, extracellular, plastid	0.89	5.69
KRG90178	Soybean	mitochondrion	2.66	4.69
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.63	4.13
KRG88725	Soybean	nucleus	1.27	3.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02001223	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	EnsemblPlantsGene:GLYMA_02G221300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0016887	GO:GO:0030983	GO:GO:0032300	GO:GO:0045910	GO:GO:0090305	UniProt:I1JH75
EnsemblPlants:KRH72584	ProteinID:KRH72584	ProteinID:KRH72584.1	InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488
PIRSF:PIRSF005814	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI000294E593	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:40900121..40918108

Molecular Weight (calculated)

87291.0 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.245

Length

790 amino acids

Sequence
(BLAST)

001: MLSFAITTHA FPVIAINKWK QRHMQRQMQR VSLSASIHHD SLRVLEWDKL CDLVASFATT SLGRQALKDQ LWSLNQTFEE SLKLLEETNA AVEMNKHGTL
101: RLHLGHLDAM LVKTAIQHAR RSIPVSGYEA RAIVALLQCA EIVQGDLKAV IKEDKDWHNR FMPLTEVIME FVINRSLIKA IEQVVDEDGS IKDSASPALK
201: QARQQVQVIE RKVQQLIESI IRNEKSETST LEVNNIDGRW CVRVDSGQKT SFKGLLLSSG SGVGSTIEPL SAVPLNDELQ RARSLVVKAE ADVLLALTKK
301: LDLDDIEKTL NSLVELDVIN ARATYGLSFG GSSPHIFLPD RSSSSTAEAF LPRSENLYGP LPSKREWTLY LLKAYHPLLL QRHKEKLRKA KKNVNLATSD
401: AALDNAPPVP VDFLVSQKTR VIVITGPNTG GKTICLKTVG LAAMMAKSGL YVLASESAQI PWFDSVFADI GDEQSLSQSL STFSGHLKQI SNIKSQSTSQ
501: SLVLLDEVGA GTNPLEGAAL GMALLESFAQ DSCLLTMATT HHGELKTLKY SDEAFENACM EFDEVNLKPT YKVLWGVPGR SNAINIAERL GLPSVVVDTA
601: RMLYGSASAE IDEVITDMER LKQEYQELLD EARHYLRHSR GLYNSLLNTR RKIIEYSTNL RFKKMRDVSE AAAMARSILH KKVRELDASA KQPSQNNKTI
701: SSSNLSATNK SQTVAENKEP TIADKSASSV KVFNRSRSDK SGPPKVGDMV HVSSLGKQVT VLKVDSSKGE IVVQAGNMKL KLKLTDIQRS

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.